Browse Element(s) Details


Os.51389.1.S2_at

Description gb:AK062692.1
DB_XREF= gi:32972710
TID=Os.51389.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-A04, full insert sequence.
FL= gb:AK103124.1 gb:AK062692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0263010/11Cytochrome P450 72A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02570Os.28346.1.S1_x_at1/1112+886161..889817expressed protein
LOC_Os12g02589OsAffx.7463.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.2.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02610NANA12+898490..899104hypothetical protein
LOC_Os12g02620Os.10542.1.S1_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02620Os.10542.1.S1_s_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02660Os.10542.2.S1_at11/1112+905832..926897expressed protein
LOC_Os12g02630Os.51389.1.S2_at10/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02630Os.51389.1.S1_at4/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02640Os.47955.1.S1_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02640Os.47955.2.S1_x_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02670Os.27569.3.S1_at6/1112+928791..933529retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02680Os.56293.1.S1_at10/1112+934256..936507expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51389.1.S2_at--682--1732Chr12:910815..910839 (25 bp)
ACCATCGTGCAGGTGCCCAGGCTGA
LOC_Os12g02630
Os.51389.1.S2_at--1061--8332Chr12:910834..910858 (25 bp)
GGCTGATGCTGCACCTGGACAAGGA
LOC_Os12g02630
Os.51389.1.S2_at--632--2351Chr12:911123..911147 (25 bp)
AAAGCTGCCATGAGCTAGCAGCCCT
LOC_Os12g02630
Os.51389.1.S2_at--942--5911Chr12:911134..911158 (25 bp)
GAGCTAGCAGCCCTGTTACTCACAC
LOC_Os12g02630
Os.51389.1.S2_at--564--3451Chr12:911164..911188 (25 bp)
CAGTCGATTCATGACAGCTCCAGTT
LOC_Os12g02630
Os.51389.1.S2_at--112--6571Chr12:911169..911193 (25 bp)
GATTCATGACAGCTCCAGTTATAAT
LOC_Os12g02630
Os.51389.1.S2_at--661--1211Chr12:911185..911209 (25 bp)
AGTTATAATTGCTGGCCACAGACAG
LOC_Os12g02630
Os.51389.1.S2_at--981--8052Chr12:911297..911321 (25 bp)
GGAGAACATTGTTGCGATCCATTCT
LOC_Os12g02630
Os.51389.1.S2_at--588--52Chr12:911304..911328 (25 bp)
ATTGTTGCGATCCATTCTTTTGGGT
LOC_Os12g02630
Os.51389.1.S2_at--407--1171Chr12:911335..911359 (25 bp)
AGTAAGAGAGGCCATCACTCCCTTT
LOC_Os12g02630
Os.51389.1.S2_at--932--4431Chr12:911345..911369 (25 bp)
GCCATCACTCCCTTTTGTATGAAAA
NONE
Target Sequence 
ACCATCGTGCAGGTGCCCAGGCTGATGCTGCACCTGGACAAGGAAGCCTGGGGCGCCGACGCCGACGAGTTCCGGCCGGA
CCGGTTCGCGAACGGCGTGGCGGCGGCGTGCAGGGCGGCGCACATGTACGTGCCGTTCGGGCACGGGCCCAGGACGTGCA
TCGGGCAGAACCTGGCAATGGCGGAGCTGAAGGTGGTGTTGGCCAGGCTGCTGACAAAGTTCGCCTTCTCGCCGTCGCCG
AGGTACCGTCACTCGCCGGCGTTCAGGCTGACCATTGAACCCGGGTTCGGCTTGCCACTCATGGTGACAAAGCTGCCATG
AGCTAGCAGCCCTGTTACTCACACCCACCCAGTCGATTCATGACAGCTCCAGTTATAATTGCTGGCCACAGACAGCAATG
CTTGTTATAATAAAGCTCCTTTTTTGAGATGAAGTTGTTAAGCACTCTAAGCTCGTTGAACCCAATCAAAGGGTTTTATG
ATGGAGAACATTGTTGCGATCCATTCTTTTGGGTTGAAAAAGTAAGAGAGGCCATCACTCCCTTTTGTATGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51389.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis