Browse Element(s) Details


Os.51396.1.S1_at

Description gb:AK062705.1
DB_XREF= gi:32972723
TID=Os.51396.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-B07, full insert sequence.
FL= gb:AK062705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0438011/11Complex 1 protein containing protein, expressed
LOC_Os04g176801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04320Os.53344.1.S1_at10/113+1969707..1975130hypothetical protein
LOC_Os03g04330OsAffx.24961.1.S1_at11/113+1976054..1976536hypothetical protein
LOC_Os03g04340Os.6433.1.S1_at11/113+1982232..198409524-methylenesterol C-methyltransferase 2, putative, expressed
LOC_Os03g04350OsAffx.24962.1.S1_at11/113+1987355..1987722hypothetical protein
LOC_Os03g04350Os.25910.1.S1_s_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04350OsAffx.16321.1.S1_x_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04360Os.50503.1.S1_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360Os.50503.1.S2_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.20487.1.S1_s_at3/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.11592.1.S1_x_at2/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04370Os.55093.1.S1_at11/113+1993159..1993854expressed protein
LOC_Os03g04380Os.51396.1.S1_at11/113+1994068..1994713Complex 1 protein containing protein, expressed
LOC_Os03g04390Os.49142.1.S1_at11/113+1994759..1997434pentatricopeptide, putative, expressed
LOC_Os03g04400Os.47349.1.S1_at9/113+1997847..2001075DnaJ domain containing protein, expressed
LOC_Os03g04410Os.7192.1.S1_at11/113+2005928..2012682Aconitate hydratase, cytoplasmic, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51396.1.S1_at--364--4012Chr04:9663191..9663216 (24 bp)
CGTCCCGCCGCATGGTCGAGGCAGA
LOC_Os04g17680
Os.51396.1.S1_at--367--8071Chr03:1994543..1994567 (25 bp)
GGAGCATAGCTGAAGTGCGGCTACA
LOC_Os03g04380
Os.51396.1.S1_at--927--2851Chr03:1994555..1994579 (25 bp)
AAGTGCGGCTACATGCCGTTTCGAT
LOC_Os03g04380
Os.51396.1.S1_at--49--2111Chr03:1994565..1994589 (25 bp)
ACATGCCGTTTCGATGCGTTTCATA
LOC_Os03g04380
Os.51396.1.S1_at--1071--4231Chr03:1994570..1994594 (25 bp)
CCGTTTCGATGCGTTTCATATGCTT
LOC_Os03g04380
Os.51396.1.S1_at--576--6351Chr03:1994577..1994601 (25 bp)
GATGCGTTTCATATGCTTAATTTTG
LOC_Os03g04380
Os.51396.1.S1_at--901--4891Chr03:1994591..1994615 (25 bp)
GCTTAATTTTGTTCTGAAGTTTGTA
LOC_Os03g04380
Os.51396.1.S1_at--783--1851Chr03:1994621..1994645 (25 bp)
ACGAGTAAAACTTGGCCTTGTGTCA
LOC_Os03g04380
Os.51396.1.S1_at--742--2391Chr03:1994628..1994652 (25 bp)
AAACTTGGCCTTGTGTCAAGCAAAT
LOC_Os03g04380
Os.51396.1.S1_at--419--7451Chr03:1994640..1994664 (25 bp)
GTGTCAAGCAAATGTTCTTCTAAAT
LOC_Os03g04380
Os.51396.1.S1_at--568--6711Chr03:1994653..1994677 (25 bp)
GTTCTTCTAAATCTCTAAATTCTGT
LOC_Os03g04380
Target Sequence 
CGTCCCGCCGCATGGTCGAGGCAGAGGAGGCCAAGCGCCGCGGCGGAGCATAGCTGAAGTGCGGCTACATGCCGTTTCGA
TGCGTTTCATATGCTTAATTTTGTTCTGAAGTTTGTATGAAAACGAGTAAAACTTGGCCTTGTGTCAAGCAAATGTTCTT
CTAAATCTCTAAATTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis