Browse Element(s) Details


Os.5143.1.S1_at

Description gb:CB618395
DB_XREF= gi:29613382
DB_XREF=OSIIEa02E07.r
CLONE=OSIIEa02E07
TID=Os.5143.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.5143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0060A14.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2661011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26560OsAffx.20357.1.S1_at11/1110+13511726..13517239expressed protein
LOC_Os10g26570Os.17997.1.S1_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26570Os.17997.2.S1_x_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26590OsAffx.6775.1.S1_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26590OsAffx.6775.1.S1_x_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26600Os.5819.1.S1_at11/1110+13535705..13537787Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os10g26610Os.5143.1.S1_at11/1110+13538758..13543896expressed protein
LOC_Os10g26620Os.5736.1.S1_s_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26620Os.5736.2.S1_x_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26630Os.15231.1.S1_at11/1110+13564752..13569346glycosyl transferase family 2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5143.1.S1_at--239--4271Chr10:13539320..13539344 (25 bp)
CCTGCGATAGGCTGTCCGGCAAAGA
LOC_Os10g26610
Os.5143.1.S1_at--838--2331Chr10:13539300..13539324 (25 bp)
AAAGACACCGAGCAGTGGTCGATCT
LOC_Os10g26610
Os.5143.1.S1_at--16--1111Chr10:13539287..13539311 (25 bp)
AGTGGTCGATCTGCAGGCTAAGAAA
LOC_Os10g26610
Os.5143.1.S1_at--499--4991Chr10:13539275..13539299 (25 bp)
GCAGGCTAAGAAACGGATTCCCGAG
LOC_Os10g26610
Os.5143.1.S1_at--438--6511Chr10:13539260..13539284 (25 bp)
GATTCCCGAGGCTAAGGTCACTTGG
LOC_Os10g26610
Os.5143.1.S1_at--113--10691Chr10:13539226..13539250 (25 bp)
TTCCAGGGTCTGGAGCTGTGCCCAA
LOC_Os10g26610
Os.5143.1.S1_at--487--3891Chr10:13539211..13539235 (25 bp)
CTGTGCCCAAGCTGGAGACTGCGTG
LOC_Os10g26610
Os.5143.1.S1_at--1095--8391Chr10:13539183..13539207 (25 bp)
GGCGCTGTCCAGATACCAAGAGCAA
LOC_Os10g26610
Os.5143.1.S1_at--1057--1351Chr10:13539165..13539189 (25 bp)
AGAGCAAGCAGCATCTCTCTGCTGA
LOC_Os10g26610
Os.5143.1.S1_at--63--3831Chr10:13539147..13539171 (25 bp)
CTGCTGAGCCGGAGTGGCCACAAGA
LOC_Os10g26610
Os.5143.1.S1_at--1130--1311Chr10:13539125..13539149 (25 bp)
AGAGGCATCATGCTGCTTCCAAGGG
LOC_Os10g26610
Target Sequence 
CCTGCGATAGGCTGTCCGGCAAAGACACCGAGCAGTGGTCGATCTGCAGGCTAAGAAACGGATTCCCGAGGCTAAGGTCA
CTTGGGGANGGCCCTTCCAGGGTCTGGAGCTGTGCCCAAGCTGGAGACTGCGTGGCTGGCGCTGTCCAGATACCAAGAGC
AAGCAGCATCTCTCTGCTGAGCCGGAGTGGCCACAAGAGGCATCATGCTGCTTCCAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis