Browse Element(s) Details


Os.51447.1.S1_s_at

Description gb:AK062827.1
DB_XREF= gi:32972845
TID=Os.51447.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51447 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-F11, full insert sequence.
FL= gb:AK062827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0867011/11expressed protein
LOC_Os04g471401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08630OsAffx.21914.1.S1_at11/111+4294733..4299183expressed protein
LOC_Os01g08630OsAffx.21914.2.S1_at9/111+4294733..4299183expressed protein
LOC_Os01g08640NANA1+4301587..4301969transposon protein, putative, unclassified
LOC_Os01g08650Os.37600.1.S1_at10/111+4303684..4306737expressed protein
LOC_Os01g08660Os.7545.1.S1_a_at11/111+4310471..4312614Major intrinsic protein, expressed
LOC_Os01g08670Os.51447.1.S1_s_at11/111+4314803..4315582expressed protein
LOC_Os01g08680Os.34739.1.S1_a_at11/111+4319529..4323144expressed protein
LOC_Os01g08680Os.34739.2.S1_at1/111+4319529..4323144expressed protein
LOC_Os01g08690OsAffx.10970.1.S1_at9/111+4323380..4325632holocarboxylase synthetase, putative, expressed
LOC_Os01g08700Os.7987.1.S1_at11/111+4326162..4335288GIGANTEA protein, putative, expressed
LOC_Os01g08710Os.55762.1.S1_at11/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710Os.30505.1.S1_at10/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_x_at9/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_at8/111+4337651..4353270WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51447.1.S1_s_at--918--7691Chr01:4315343..4315367 (25 bp)
GGGTGTTCGACGGTGTCCACCACGC
LOC_Os01g08670
Os.51447.1.S1_s_at--1007--2451Chr01:4315200..4315224 (25 bp)
AACAAGAAGCGGATCCTGCTCTGCG
LOC_Os01g08670
Os.51447.1.S1_s_at--887--6131Chr01:4315132..4315156 (25 bp)
GAGGGTGCCCTACGACGCCTACAGC
LOC_Os01g08670
Os.51447.1.S1_s_at--824--2152Chr04:27776385..27776408 (24 bp)
ACAGCTACGCGCAGAACTTCGACGA
LOC_Os04g47140
Os.51447.1.S1_s_at--101--7531Chr01:4315074..4315098 (25 bp)
GTGGAGCCGGAGAACCTCTCGCGCT
LOC_Os01g08670
Os.51447.1.S1_s_at--977--10631Chr01:4315035..4315059 (25 bp)
TTCGCCGTCCCGTCGAGGGTGCTGC
LOC_Os01g08670
Os.51447.1.S1_s_at--80--2631Chr01:4314934..4314958 (25 bp)
AACCGGTGGCTTTCTCGTTCTTGAT
LOC_Os01g08670
Os.51447.1.S1_s_at--366--4891Chr01:4314926..4314950 (25 bp)
GCTTTCTCGTTCTTGATTTTCTTTT
LOC_Os01g08670
Os.51447.1.S1_s_at--856--3672Chr03:12829320..12829354 (24 bp)
CTTTTTCTCTCAATTTCTCTCCTTT
NONE
Os.51447.1.S1_s_at--19--9751Chr01:4314897..4314921 (25 bp)
TCAATTTCTCTCCTTTTCTTCTCCT
LOC_Os01g08670
Os.51447.1.S1_s_at--134--9271Chr01:4314867..4314891 (25 bp)
TCCTCCTCCCAATTTTGGAGTCAAA
LOC_Os01g08670
Target Sequence 
GGGTGTTCGACGGTGTCCACCACGCCGACGGGAAGCCCGGCGCGGCGTCCCGCGGCGCGGGGGCTCCTGCGTCGGCGTCG
GCGTCGTCGGGGCGCGGGTGCGGGACGAGGCTGAAGGGCCTGTGGCGGCGGATCCTGCGGGAGAACAAGAAGCGGATCCT
GCTCTGCGCCACCGGCTGCGTTCCGGCGTCGTCGTCGGCGGCGGCGGCGGCGAGGGTGCCCTACGACGCCTACAGCTACG
CGCAGAACTTCGACGACGGCGCGGCGTGGGTGGAGCCGGAGAACCTCTCGCGCTCCTTCTCCGCGCGCTTCGCCGTCCCG
TCGAGGGTGCTGCAGCGGGTCGCCGTGTAGACGACGACGACGGCGACGGCAGCGGCGGCGGCGGCGGCGGCGGCGATCGT
CGGAGAGAAAACCGGTGGCTTTCTCGTTCTTGATTTTCTTTTTCTCTCAATTTCTCTCCTTTTCTTCTCCTCCTCCTCCT
CCTCCCAATTTTGGAGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51447.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis