Browse Element(s) Details


Os.51480.1.S1_at

Description gb:AK105208.1
DB_XREF= gi:32990417
TID=Os.51480.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-H09, full insert sequence.
FL= gb:AK062916.1 gb:AK105208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6298011/11protease inhibitor/seed storage/lipid transfer protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62950Os.34462.1.S1_at11/111+36794768..36797290Ras-related protein Rab11C, putative, expressed
LOC_Os01g62960OsAffx.27770.1.S1_x_at4/111+36804898..36805519hypothetical protein
LOC_Os01g62970Os.20863.1.S1_at11/111+36807359..36810839expressed protein
LOC_Os01g62970Os.20863.2.S1_x_at8/111+36807359..36810839expressed protein
LOC_Os01g62980Os.51480.1.S1_x_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62980Os.51480.1.S1_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62990OsAffx.23897.1.S1_at11/111+36812434..36816566pollen-specific kinase partner protein, putative, expressed
LOC_Os01g63000Os.28824.1.S1_at3/111+36822985..36823191expressed protein
LOC_Os01g63010Os.16018.1.S1_at11/111+36823635..36825014ENOD18 protein, putative, expressed
LOC_Os01g63020OsAffx.23898.1.S1_at11/111+36826948..36830514hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51480.1.S1_at--640--4191Chr01:36811467..36811491 (25 bp)
CCCCGTGGACCAGGTGGCGCTTAAG
LOC_Os01g62980
Os.51480.1.S1_at--1118--4231Chr01:36811465..36811489 (25 bp)
CCGTGGACCAGGTGGCGCTTAAGCT
LOC_Os01g62980
Os.51480.1.S1_at--184--1731Chr01:36811459..36811483 (25 bp)
ACCAGGTGGCGCTTAAGCTGGCGCC
LOC_Os01g62980
Os.51480.1.S1_at--717--2551Chr01:36811391..36811415 (25 bp)
AACTGCTGCGCGCAGGTGCGCAGCA
LOC_Os01g62980
Os.51480.1.S1_at--208--6431Chr01:36810921..36810945 (25 bp)
GATAAGTTCTGTGAAATTCAAGGAT
LOC_Os01g62980
Os.51480.1.S1_at--938--3131Chr01:36810907..36810931 (25 bp)
AATTCAAGGATGTGACTTCTCCTGG
LOC_Os01g62980
Os.51480.1.S1_at--293--2911Chr01:36810902..36810926 (25 bp)
AAGGATGTGACTTCTCCTGGATCTT
LOC_Os01g62980
Os.51480.1.S1_at--712--771Chr01:36810898..36810922 (25 bp)
ATGTGACTTCTCCTGGATCTTTCTG
LOC_Os01g62980
Os.51480.1.S1_at--697--5691Chr01:36810894..36810918 (25 bp)
GACTTCTCCTGGATCTTTCTGAATA
LOC_Os01g62980
Os.51480.1.S1_at--843--10571Chr01:36810891..36810915 (25 bp)
TTCTCCTGGATCTTTCTGAATAATG
LOC_Os01g62980
Os.51480.1.S1_at--872--10271Chr01:36810879..36810903 (25 bp)
TTTCTGAATAATGCAGTTGATGATT
LOC_Os01g62980
Target Sequence 
CCCCGTGGACCAGGTGGCGCTTAAGCTGGCGCCGTGCGCGGCGGCCACGCAGAACCCGCGCGCCGCGGTGCCGCCCAACT
GCTGCGCGCAGGTGCGCAGCATNGGGCGGAACCCCAAGTGCCTGTGCGCCGNCATGCTGTCGAACACCGCGCGGAGCGCC
GGCGTCAAGCCCGCCGTGGCCATGACCATCCCCAAGCNCTGCGCCATCGCCAACCGCCCCATCGGNTACAAATGTGGCCC
NATACACCCNTGCCNTGAGGAGCAAAGGGATGGAACTGGAAGGGCACTCGAACACTTTGACTATCCGATATATATATATA
TAAACTGATGTTACCTTTGTCACGTGAAACTTTTCATAAATCTTTCTAAATAACGCAGTTGTAATGACTCTGTTGAAATA
AAGTACCTTTATGACTATCGAATAGTGGTGCTATCTATAAGAGAACAGTTTGATAAGTTCTGTGAAATTCAAGGATGTGA
CTTCTCCTGGATCTTTCTGAATAATGCAGTTGATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis