Browse Element(s) Details


Os.5152.1.S1_at

Description gb:AK073222.1
DB_XREF= gi:32983245
TID=Os.5152.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024D09, full insert sequence.
FL= gb:AK073222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0540011/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05390Os.54195.1.S1_at11/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05390Os.21031.1.S1_at10/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05390OsAffx.18687.1.S1_x_at9/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05400Os.5152.1.S1_at11/1111+2419507..2422484Ser/Thr protein phosphatase family protein, expressed
LOC_Os11g05410Os.13516.1.S1_at2/1111+2428893..2432704calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os11g05410OsAffx.9512.1.S1_x_at1/1111+2428893..2432704calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os11g05420OsAffx.7002.1.S1_at11/1111+2433667..2435897hypothetical protein
LOC_Os11g05430OsAffx.18688.1.S1_at8/1111+2438566..2439788hypothetical protein
LOC_Os11g05440OsAffx.7003.1.S1_at11/1111+2441129..2441608expressed protein
LOC_Os11g05450OsAffx.18689.1.S1_at11/1111+2444095..2444523hypothetical protein
LOC_Os11g05460NANA11+2445811..2447095hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5152.1.S1_at--864--2471Chr11:2420389..2420413 (25 bp)
AACAGGGAAGGCCTTGCTCTCAAGT
LOC_Os11g05400
Os.5152.1.S1_at--652--1071Chr11:2420389..2420410 (22 bp)
AGGGAAGGCCTTGCTCTCAAGTTCA
LOC_Os11g05400
Os.5152.1.S1_at--338--2211Chr11:2419999..2420023 (25 bp)
ACAAGTCGGCGCACCTGTCGGAGTT
LOC_Os11g05400
Os.5152.1.S1_at--1108--5091Chr11:2419956..2419980 (25 bp)
GCACGGGCGGCTGAGGGTCCTGAAC
LOC_Os11g05400
Os.5152.1.S1_at--335--3931Chr11:2419949..2419973 (25 bp)
CGGCTGAGGGTCCTGAACGAGACGA
LOC_Os11g05400
Os.5152.1.S1_at--609--391Chr11:2419687..2419711 (25 bp)
ATCAGCCATAAACATTGTCCATTTG
LOC_Os11g05400
Os.5152.1.S1_at--151--10831Chr11:2419673..2419697 (25 bp)
TTGTCCATTTGTCCTTGTAAATCAA
LOC_Os11g05400
Os.5152.1.S1_at--81--3591Chr11:2419668..2419692 (25 bp)
CATTTGTCCTTGTAAATCAATCGTG
LOC_Os11g05400
Os.5152.1.S1_at--293--10011Chr11:2419586..2419610 (25 bp)
TAGAATTTCAGTGTACAAGGCCAAC
LOC_Os11g05400
Os.5152.1.S1_at--1136--10172Chr11:2419529..2419553 (25 bp)
TATACTTATCATCCAAAATTTGAAG
LOC_Os11g05400
Os.5152.1.S1_at--767--5331Chr11:2419508..2419532 (25 bp)
GAAGTTTCAGCTTTCAATTTGGAGT
LOC_Os11g05400
Target Sequence 
AACAGGGAAGGCCTTGCTCTCAAGTTCATCAAGGGGCACAAGTCGGCGCACCTGTCGGAGTTCAGGGAGGCGAGCTTCGG
GCACGGGCGGCTGAGGGTCCTGAACGAGACGAGCGCCGTCTGGACGTGGCACCGCAACGACGACCAGTTCGCCACCGTCC
GCGACGAGGTCTGGCTGCACAGCTTGGCCGCCGGCGAGCCAGCTGCTACAGTAGCCTCCGCCGCCGGCGGCGGCGGCGGC
CATCCGGCCGACGAGCTGTAGGCTATATATATCTCACACTGTTAAGAATGAATGGAAGAAAAGGAAACTTCACCACATTT
AGCATTGTCTTTTATTTTTTTTCTTTTTCATCAGCCATAAACATTGTCCATTTGTCCTTGTAAATCAATCGTGATATCGT
GTGTTTCAGCTAGTGTACAGTGTTTTTCTTGTGTTAGACACGTGGTGAAATAGAATTTCAGTGTACAAGGCCAACACTGA
TGGGCTCATCTTTTCGCTTATACTATTTATACTTATCATCCAAAATTTGAAGTTTCAGCTTTCAATTTGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis