Browse Element(s) Details


Os.54195.1.S1_at

Description gb:AK102457.1
DB_XREF= gi:32987666
TID=Os.54195.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094B15, full insert sequence.
FL= gb:AK102457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0539011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05380Os.14105.1.S1_at11/1111+2386354..2388224Cytochrome P450 family protein, expressed
LOC_Os11g05390Os.54195.1.S1_at11/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05390Os.21031.1.S1_at10/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05390OsAffx.18687.1.S1_x_at9/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05400Os.5152.1.S1_at11/1111+2419507..2422484Ser/Thr protein phosphatase family protein, expressed
LOC_Os11g05410Os.13516.1.S1_at2/1111+2428893..2432704calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os11g05410OsAffx.9512.1.S1_x_at1/1111+2428893..2432704calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os11g05420OsAffx.7002.1.S1_at11/1111+2433667..2435897hypothetical protein
LOC_Os11g05430OsAffx.18688.1.S1_at8/1111+2438566..2439788hypothetical protein
LOC_Os11g05440OsAffx.7003.1.S1_at11/1111+2441129..2441608expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0003723molecular_functionRNA binding
GO:0008493molecular_functiontetracycline transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54195.1.S1_at--514--8171Chr11:2409892..2409916 (25 bp)
GGAACTGAACTTTGTACCTGTACAT
LOC_Os11g05390
Os.54195.1.S1_at--574--9971Chr11:2409878..2409902 (25 bp)
TACCTGTACATACCATTCTACCTGG
LOC_Os11g05390
Os.54195.1.S1_at--325--10571Chr11:2409863..2409887 (25 bp)
TTCTACCTGGCAAACATCTGAAGTT
LOC_Os11g05390
Os.54195.1.S1_at--1046--6571Chr11:2409834..2409858 (25 bp)
GATTGCATTGGTTGTAACGCCACAA
LOC_Os11g05390
Os.54195.1.S1_at--924--7051Chr11:2409821..2409845 (25 bp)
GTAACGCCACAATCTTGAAACTCAT
LOC_Os11g05390
Os.54195.1.S1_at--494--5011Chr11:2409658..2409682 (25 bp)
GCAGGTAACTTTATCTCCGACTTAA
LOC_Os11g05390
Os.54195.1.S1_at--715--231Chr11:2409619..2409643 (25 bp)
ATATCACTGGCATATGGGTCCACAG
LOC_Os11g05390
Os.54195.1.S1_at--234--4371Chr11:2409600..2409624 (25 bp)
CCACAGCAATGGCACGGTATTACAA
LOC_Os11g05390
Os.54195.1.S1_at--218--7471Chr11:2409573..2409597 (25 bp)
GTGTGCCTGCACTTTATAGTTGCAA
LOC_Os11g05390
Os.54195.1.S1_at--334--6631Chr11:2409555..2409579 (25 bp)
GTTGCAACTGACTGAACCAAGGCTG
LOC_Os11g05390
Os.54195.1.S1_at--585--2651Chr11:2409541..2409565 (25 bp)
AACCAAGGCTGTTCTCGTGAAATTA
LOC_Os11g05390
Target Sequence 
GGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAAGTTTGAAGATTGCATTGGTTGTAACGCCA
CAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATATTAATTGTACATATAGCGGATGTTAATG
TTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGTTGCAGGT
AACTTTATCTCCGACTTAAGTTAGGTGACTTTAATATCACTGGCATATGGGTCCACAGCAATGGCACGGTATTACAAAAG
TGTGCCTGCACTTTATAGTTGCAACTGACTGAACCAAGGCTGTTCTCGTGAAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis