Browse Element(s) Details


Os.51588.1.S1_x_at

Description gb:AK063123.1
DB_XREF= gi:32973141
TID=Os.51588.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E10, full insert sequence.
FL= gb:AK063123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0130011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01260Os.53833.1.S1_at11/117+153181..156900RNA-binding protein homolog, putative, expressed
LOC_Os07g01270OsAffx.26147.4.S1_s_at11/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270OsAffx.26147.2.S1_x_at9/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270Os.44572.1.S1_x_at8/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01280OsAffx.28220.1.S1_s_at11/117+172041..175550hypothetical protein
LOC_Os07g01290NANA7+177299..179836transposon protein, putative, Mutator sub-class
LOC_Os07g01300Os.51588.1.S1_x_at11/117+180814..181542expressed protein
LOC_Os07g01300Os.51588.1.S1_at11/117+180814..181542expressed protein
LOC_Os07g01300OsAffx.8749.1.S1_at4/117+180814..181542expressed protein
LOC_Os07g01310Os.40446.1.S1_at9/117+189343..194728Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g01320Os.6121.1.S1_at11/117+194377..198122expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51588.1.S1_x_at--859--6071Chr07:181434..181458 (25 bp)
GAGTATCAACCTACGGTGCTGTGCA
LOC_Os07g01300
Os.51588.1.S1_x_at--733--831Chr07:181387..181411 (25 bp)
ATGGATCTCGTGGAGCCGTGACAAC
LOC_Os07g01300
Os.51588.1.S1_x_at--711--2291Chr07:181234..181368 (25 bp)
AAATGTCGCAATGCTCGAGGCCAAC
LOC_Os07g01300
Os.51588.1.S1_x_at--905--6211Chr07:181218..181240 (23 bp)
GAGGCCAACGAGCAGTTTTATCAGA
LOC_Os07g01300
Os.51588.1.S1_x_at--7--10711Chr07:181178..181202 (25 bp)
TTGCGCGATGCGGTGTGGTCACTAA
LOC_Os07g01300
Os.51588.1.S1_x_at--529--671Chr07:181141..181165 (25 bp)
ATGAACTTTTTGTTGCTGTTAGGGA
LOC_Os07g01300
Os.51588.1.S1_x_at--168--5171Chr07:181113..181137 (25 bp)
GCAAGCCATGGCTCGTGATGTAGAT
LOC_Os07g01300
Os.51588.1.S1_x_at--1080--3511Chr07:181055..181079 (25 bp)
CATGTTGTTGAGACCGATGCAAAAT
LOC_Os07g01300
Os.51588.1.S1_x_at--700--6811Chr07:180970..180994 (25 bp)
GTTTTACTGGCAATCTGTGGTCTGT
LOC_Os07g01300
Os.51588.1.S1_x_at--321--491Chr07:180958..180982 (25 bp)
ATCTGTGGTCTGTTTGTCATGGTTT
LOC_Os07g01300
Os.51588.1.S1_x_at--709--5311Chr07:180892..180916 (25 bp)
GAAGGTACTAAGAATGTCAGCTGAG
LOC_Os07g01300
Target Sequence 
GAGTATCAACCTACGGTGCTGTGCAGATGCAGAGCGAAGGCGGCACGATGGATCTCGTGGAGCCGTGACAACCCGGGGCG
ACGATACTACAAATGTCGCAATGCTCGAGGCCAACGAGCAGTTTTATCAGAGATCTGTTGAATGATTTGCGCGATGCGGT
GTGGTCACTAAGGAGGGAGAAGGATGAACTTTTTGTTGCTGTTAGGGAAGGGCAAGCCATGGCTCGTGATGTAGATACAG
CTAGGAGGGAGTTGGCAGCGTTGAAGAAGCATGTTGTTGAGACCGATGCAAAATTGGTTCTGTTGAAAGAACAAAACCGT
AGGCTAGAGAAGGATAGGTGCGTGCTTTTTTTTTGTTTTACTGGCAATCTGTGGTCTGTTTGTCATGGTTTGGGTGATGA
ACTGAGTAGTATCAGTGAATGTTATTATGATGGAAGGTACTAAGAATGTCAGCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51588.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis