Browse Element(s) Details


Os.51592.1.S1_at

Description gb:AK063128.1
DB_XREF= gi:32973146
TID=Os.51592.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-F04, full insert sequence.
FL= gb:AK063128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4080911/11expressed protein
LOC_Os01g0538010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40790OsAffx.28028.1.S1_x_at10/116+24331456..24337115Mlo family protein
LOC_Os06g40790OsAffx.28028.1.S1_at10/116+24331456..24337115Mlo family protein
LOC_Os06g40800OsAffx.15865.1.S1_at11/116+24340756..24341322hypothetical protein
LOC_Os06g40809Os.51592.1.S1_at11/116+24342914..24343459expressed protein
LOC_Os06g40818OsAffx.5071.1.S1_s_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.51403.1.S1_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.6790.1.S1_at10/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818OsAffx.988.1.S1_at1/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40830Os.37083.2.S1_at1/116+24356542..24356868retrotransposon protein, putative, unclassified
LOC_Os06g40840Os.47954.1.S1_at11/116+24358245..24362678microtubule associated protein family protein, putative, expressed
LOC_Os06g40850Os.56087.1.S1_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40850OsAffx.15866.1.S1_x_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51592.1.S1_at--1118--1513Chr06:24343132..24343156 (25 bp)
AGCAGCAGCCAGTAGCCCAGTGGCA
LOC_Os06g40809
Os.51592.1.S1_at--243--4352Chr06:24343140..24343164 (25 bp)
CCAGTAGCCCAGTGGCAGCAGGTGT
LOC_Os06g40809
Os.51592.1.S1_at--1157--4272Chr06:24343166..24343190 (25 bp)
CCTGCTTCTGCTTATATTATGTTCT
LOC_Os06g40809
Os.51592.1.S1_at--421--272Chr06:24343222..24343246 (25 bp)
ATATGTTCTATTGCCATTCACCAAG
LOC_Os06g40809
Os.51592.1.S1_at--312--4332Chr06:24343235..24343259 (25 bp)
CCATTCACCAAGCACTCCAATAAAG
LOC_Os06g40809
Os.51592.1.S1_at--506--3232Chr06:24343243..24343267 (25 bp)
CAAGCACTCCAATAAAGACAGACTG
LOC_Os06g40809
Os.51592.1.S1_at--480--5652Chr06:24343259..24343283 (25 bp)
GACAGACTGCTAGTATGTCCAGCTA
LOC_Os06g40809
Os.51592.1.S1_at--1161--6912Chr06:24343271..24343295 (25 bp)
GTATGTCCAGCTAAAGACAGACGGT
LOC_Os06g40809
Os.51592.1.S1_at--460--1412Chr06:24343285..24343309 (25 bp)
AGACAGACGGTGTTCTTGAGCCTAA
LOC_Os06g40809
Os.51592.1.S1_at--858--3892Chr06:24343292..24343316 (25 bp)
CGGTGTTCTTGAGCCTAAACCGTTG
LOC_Os06g40809
Os.51592.1.S1_at--978--10251Chr06:24343318..24343342 (25 bp)
TTTGATTTCTTTTATCGTACAGATT
LOC_Os06g40809
Target Sequence 
AGCAGCAGCCAGTAGCCCAGTGGCAGCAGGTGTTCCTGCTTCTGCTTATATTATGTTCTGTTAATTTTGTAGAAGAGAAC
TGTATTATTAATATGTTCTATTGCCATTCACCAAGCACTCCAATAAAGACAGACTGCTAGTATGTCCAGCTAAAGACAGA
CGGTGTTCTTGAGCCTAAACCGTTGATTTGATTTCTTTTATCGTACAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis