Browse Element(s) Details


Os.51627.1.A1_at

Description gb:AK063214.1
DB_XREF= gi:32973232
TID=Os.51627.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-D10, full insert sequence.
FL= gb:AK063214.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3131011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31270OsAffx.17972.1.S1_at11/119+18800409..18802436glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g31280Os.15215.1.S1_at11/119+18804788..18807713OTU-like cysteine protease family protein, putative, expressed
LOC_Os09g31290OsAffx.6462.1.S1_at11/119+18810700..18811891hypothetical protein
LOC_Os09g31300Os.20361.1.A1_at11/119+18813191..18816005Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g31310Os.51627.1.A1_at11/119+18824515..18825255acetyltransferase, GNAT family protein, expressed
LOC_Os09g31319OsAffx.8598.1.S1_at1/119+18831048..18832707NA
LOC_Os09g31330NANA9+18836405..18837157hypothetical protein
LOC_Os09g31340NANA9+18839526..18840120hypothetical protein
LOC_Os09g31350OsAffx.17975.1.S1_at11/119+18844066..18846214expressed protein
LOC_Os09g31360Os.51234.1.S1_at11/119+18848920..18852298expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51627.1.A1_at--821--7671Chr09:18824832..18824856 (25 bp)
GGGTTGCTACAAGGTCATCATCAAC
LOC_Os09g31310
Os.51627.1.A1_at--637--411Chr09:18824816..18824840 (25 bp)
ATCATCAACTGCACCCCGGAGCTGA
LOC_Os09g31310
Os.51627.1.A1_at--835--3151Chr09:18824730..18824754 (25 bp)
AATTCTGATCTAGGTTTCGTCTTCT
LOC_Os09g31310
Os.51627.1.A1_at--556--1011Chr09:18824719..18824743 (25 bp)
AGGTTTCGTCTTCTTGGATCTCTCT
LOC_Os09g31310
Os.51627.1.A1_at--705--3771Chr09:18824698..18824722 (25 bp)
CTCTGCCTACTACTTGTTGTACTTA
LOC_Os09g31310
Os.51627.1.A1_at--1049--751Chr09:18824657..18824681 (25 bp)
ATGTCAGTTATTGCTCCTTGTATGG
LOC_Os09g31310
Os.51627.1.A1_at--692--6451Chr09:18824618..18824642 (25 bp)
GATCAATGTGGCTAATTCCATTTGC
LOC_Os09g31310
Os.51627.1.A1_at--756--8311Chr09:18824609..18824633 (25 bp)
GGCTAATTCCATTTGCATTGCCAAG
LOC_Os09g31310
Os.51627.1.A1_at--765--4391Chr09:18824590..18824614 (25 bp)
GCCAAGATGTGCAAGTTTATTTAAT
LOC_Os09g31310
Os.51627.1.A1_at--734--8571Chr09:18824561..18824585 (25 bp)
TGGATTGTTCTCTGCATTTATGTGC
LOC_Os09g31310
Os.51627.1.A1_at--332--7351Chr09:18824540..18824564 (25 bp)
GTGCAAATCTCATTCTTGCAAATGA
LOC_Os09g31310
Target Sequence 
GGGTTGCTACAAGGTCATCATCAACTGCACCCCGGAGCTGACGGGGTTCTACGCCAAGTGCGGGTTCGTGGAGAAGAACG
TCCAGATGGGGCTCTACTTCTGAATTCTGATCTAGGTTTCGTCTTCTTGGATCTCTCTGCCTACTACTTGTTGTACTTAG
TTAATAAGGAATTTTATGTCAGTTATTGCTCCTTGTATGGATGGATGGATCACTGATCAATGTGGCTAATTCCATTTGCA
TTGCCAAGATGTGCAAGTTTATTTAATTGAATGGATTGTTCTCTGCATTTATGTGCAAATCTCATTCTTGCAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51627.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis