Browse Element(s) Details


Os.51630.1.A1_at

Description gb:AK063220.1
DB_XREF= gi:32973238
TID=Os.51630.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E04, full insert sequence.
FL= gb:AK063220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0343011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03380OsAffx.15220.1.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.2.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.5.S1_at9/112+1369986..1374150hypothetical protein
LOC_Os02g03380Os.13877.1.S1_at3/112+1369986..1374150hypothetical protein
LOC_Os02g03390OsAffx.24081.1.S1_at11/112+1375705..1376318hypothetical protein
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein
LOC_Os02g03440OsAffx.11876.1.S1_at10/112+1399613..1401222Sm protein, expressed
LOC_Os02g03450Os.5994.1.A1_at10/112+1402582..1404558Golgi SNARE 12 protein, putative, expressed
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51630.1.A1_at--10--9711Chr02:1398176..1398200 (25 bp)
TCAACACCGTGCTACCTGGTCAAGA
LOC_Os02g03430
Os.51630.1.A1_at--685--2811Chr02:1398197..1398221 (25 bp)
AAGATTTTGATACCCCATCACTCGA
LOC_Os02g03430
Os.51630.1.A1_at--558--6551Chr02:1398558..1398582 (25 bp)
GATTACATCCGCGACAACGTCAAGG
LOC_Os02g03430
Os.51630.1.A1_at--381--4671Chr02:1398633..1398657 (25 bp)
GCGGGAGCCATCGTCCTCAAGAGGA
LOC_Os02g03430
Os.51630.1.A1_at--161--1371Chr02:1398664..1398688 (25 bp)
AGAGCATCCCGCAGCTGAAGAGGCT
LOC_Os02g03430
Os.51630.1.A1_at--441--2011Chr02:1398726..1398750 (25 bp)
ACTCTCGCTGCCATCATGGGAGCAA
LOC_Os02g03430
Os.51630.1.A1_at--466--9751Chr02:1398800..1398824 (25 bp)
TAATCATCTACATTGCGTCGGCAGT
LOC_Os02g03430
Os.51630.1.A1_at--862--6311Chr02:1398848..1398872 (25 bp)
GATGAATGTCGATCAAATCTGCACT
LOC_Os02g03430
Os.51630.1.A1_at--950--3051Chr02:1398863..1398887 (25 bp)
AATCTGCACTGCAATGTCAGCGTCA
LOC_Os02g03430
Os.51630.1.A1_at--312--3071Chr02:1398913..1398937 (25 bp)
AATCTTCTTTATTGTTACTGTCCAT
LOC_Os02g03430
Os.51630.1.A1_at--300--9751Chr02:1398946..1398970 (25 bp)
TAATATCACACACCGGGATACGCCT
LOC_Os02g03430
Target Sequence 
TCAACACCGTGCTACCTGGTCAAGATTTTGATACCCCATCACTCGAAAAAATTCAGAAATTCTATGATGATACTTGGAAA
CTGATCAACGAAGACCAAGAAAAGAAGAAAGCGTTCATGGATTACATCCGCGACAACGTCAAGGAGGCGGCGGTCGACGA
CAGCCTCTTCATCATGGCCGGGCTGGCGGCGCCGGCGGGAGCCATCGTCCTCAAGAGGACAGGGCAGAGCATCCCGCAGC
TGAAGAGGCTGGACCTCCTCCCCAACGTCCTCTTCGTCCCGCTCTTCACTCTCGCTGCCATCATGGGAGCAACTGCAGTC
CAGATGAAGCAGAGGAGCAGACACACCTGATCTCCTCATCATAATCATCTACATTGCGTCGGCAGTTATAATTTACAAAT
AATAACATGGATGAATGTCGATCAAATCTGCACTGCAATGTCAGCGTCAAATATATACACACGTTTTCTTTTGTAATCTT
CTTTATTGTTACTGTCCATACTGATAATAATATCACACACCGGGATACGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51630.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis