Browse Element(s) Details


Os.51639.1.S1_x_at

Description gb:AK063244.1
DB_XREF= gi:32973262
TID=Os.51639.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G07, full insert sequence.
FL= gb:AK063244.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3804011/11LysM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37990OsAffx.20185.1.S1_at10/1110+20022516..20025009hypothetical protein
LOC_Os10g38000OsAffx.30708.1.S1_x_at11/1110+20025393..20025974AP2 domain containing protein
LOC_Os10g38020Os.23271.2.A1_x_at11/1110+20031264..20035426expressed protein
LOC_Os10g38020Os.23271.1.S1_at1/1110+20031264..20035426expressed protein
LOC_Os10g38030Os.21030.1.S1_at11/1110+20035645..20038586Per1-like family protein, expressed
LOC_Os10g38040Os.51639.1.S1_x_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38040Os.11882.1.S1_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38060Os.9389.2.S2_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S1_s_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060OsAffx.30709.1.S1_x_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S2_a_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38050Os.9389.1.A1_a_at11/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38050OsAffx.12714.1.S1_x_at2/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38070OsAffx.7960.1.S1_at11/1110+20058201..20059181expressed protein
LOC_Os10g38080Os.6363.1.S1_at11/1110+20059961..20062501Subtilisin N-terminal Region family protein, expressed
LOC_Os10g38090Os.39214.1.S1_at11/1110+20065112..20069616Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016998biological_processcell wall catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51639.1.S1_x_at--696--2531Chr10:20044608..20044632 (25 bp)
AACTAGCTGCATGGCAATGGCGGGA
LOC_Os10g38040
Os.51639.1.S1_x_at--115--3911Chr10:20044929..20044953 (25 bp)
CGGCCGCCGCAACTGAACTGAACTT
LOC_Os10g38040
Os.51639.1.S1_x_at--785--5471Chr10:20044948..20044972 (25 bp)
GAACTTGCTGATCGATCAACGCGTT
LOC_Os10g38040
Os.51639.1.S1_x_at--910--371Chr10:20044962..20044986 (25 bp)
ATCAACGCGTTGATCTATCTCTGAT
LOC_Os10g38040
Os.51639.1.S1_x_at--255--8851Chr10:20044972..20044996 (25 bp)
TGATCTATCTCTGATCGATCGAGAG
LOC_Os10g38040
Os.51639.1.S1_x_at--939--6017Chr12:7807804..7807824 (21 bp)
GAGAGATCGATCAACCTGTACAGTG
NONE
Os.51639.1.S1_x_at--273--2611Chr10:20045004..20045028 (25 bp)
AACCTGTACAGTGGACACCGATCGA
LOC_Os10g38040
Os.51639.1.S1_x_at--389--8531Chr10:20045015..20045039 (25 bp)
TGGACACCGATCGACGCGAATGTAT
LOC_Os10g38040
Os.51639.1.S1_x_at--300--871Chr10:20045038..20045062 (25 bp)
ATGGCGGAATGCAGAGATGGTTCTT
LOC_Os10g38040
Os.51639.1.S1_x_at--877--1331Chr10:20045050..20045074 (25 bp)
AGAGATGGTTCTTGTTTGTTTGTGT
LOC_Os10g38040
Os.51639.1.S1_x_at--167--10811Chr10:20045065..20045089 (25 bp)
TTGTTTGTGTTTTTTCTTGCTTTGA
LOC_Os10g38040
Target Sequence 
AACTAGCTGCATGGCAATGGCGGGAGAGAGTAGGAGGAGGAGGAGGGCGGCGGCGGAGGCGGTGGCGTGGTGCTTGGCGC
TGGGCGTGGTGGCGCTGCTGCTGGTGGGGTCGGTGGAGAAGGAGGAGGAGGTGGTGGTGGTGCGCGGGGCGCGGCTGGCG
GCGGCGCGGCCGTGCGAGGAGATATACGTGGTGGAGGAAGGGGAGACGCTGCACAGCATCAGCGACAGGTGCGGCGACCC
GTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGCGCC
CCGGCCGCCGCAACTGAACTGAACTTGCTGATCGATCAACGCGTTGATCTATCTCTGATCGATCGAGAGATCGATCAACC
TGTACAGTGGACACCGATCGACGCGAATGTATGGCGGAATGCAGAGATGGTTCTTGTTTGTTTGTGTTTTTTCTTGCTTT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51639.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis