Browse Element(s) Details


Os.51643.1.S1_at

Description gb:AK063252.1
DB_XREF= gi:32973270
TID=Os.51643.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51643 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-H05, full insert sequence.
FL= gb:AK063252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4639011/11small nuclear ribonucleoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46360OsAffx.28131.1.S1_at11/116+28128074..28129081hypothetical protein
LOC_Os06g46366Os.17420.1.S1_at11/116+28132803..28137103Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g46372OsAffx.15952.1.S1_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46372Os.51846.1.S1_x_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46380Os.7455.1.S1_at11/116+28142933..28147374Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os06g46390Os.51643.1.S1_at11/116+28147995..28148791small nuclear ribonucleoprotein, putative, expressed
LOC_Os06g46400Os.18000.1.A1_at11/116+28150362..28155785YT521-B-like family protein, expressed
LOC_Os06g46410Os.22750.1.S1_at11/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46410OsAffx.28217.1.S1_at1/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46420OsAffx.15953.1.S1_at11/116+28171763..28172389hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51643.1.S1_at--374--9431Chr06:28148464..28148488 (25 bp)
TCGGGCTGTTCCACTGCGTCGACAA
LOC_Os06g46390
Os.51643.1.S1_at--999--9211Chr06:28148422..28148446 (25 bp)
TCCAGGACGCCGTGGAGTACAGGAC
LOC_Os06g46390
Os.51643.1.S1_at--982--7211Chr06:28148282..28148306 (25 bp)
GTCGAGGAGAGCATGTCGCTCCTCT
LOC_Os06g46390
Os.51643.1.S1_at--59--9271Chr06:28148263..28148287 (25 bp)
TCCTCTCTCTCGACAGGTGAAGATG
LOC_Os06g46390
Os.51643.1.S1_at--766--6511Chr06:28148233..28148257 (25 bp)
GATATACATATGCTTCTCTAGCTTT
LOC_Os06g46390
Os.51643.1.S1_at--574--2531Chr06:28148170..28148194 (25 bp)
AACTAGCTTTTCAGCCTTGGATGAA
LOC_Os06g46390
Os.51643.1.S1_at--139--3891Chr06:28148099..28148123 (25 bp)
CTGTCATATGGGTTGCTGTTCATCT
LOC_Os06g46390
Os.51643.1.S1_at--1101--431Chr06:28148078..28148102 (25 bp)
ATCTTTCACTCCTGTAGTCTGTAGA
LOC_Os06g46390
Os.51643.1.S1_at--728--9911Chr06:28148034..28148058 (25 bp)
TACTGCTACTGGTTGCATCTCACTA
LOC_Os06g46390
Os.51643.1.S1_at--454--451Chr06:28148018..28148042 (25 bp)
ATCTCACTACGGTCAGTTTACTGGC
LOC_Os06g46390
Os.51643.1.S1_at--207--1211Chr06:28148004..28148028 (25 bp)
AGTTTACTGGCCGAGAGTTCTTCAG
LOC_Os06g46390
Target Sequence 
TCGGGCTGTTCCACTGCGTCGACAAGCAGGGGAACATCCTCCTCCAGGACGCCGTGGAGTACAGGACCAGCGCGCGGCGG
CGGTCGCCGTCTTCGCCGTCGTCTTCACCCGCGGAGCAGCGCGGCCTCGGCCTCATCCTCATCCCGGCCGCCTGCCGCTC
CTCCTGCCATGTCGACTGCGCCGTCGAGGAGAGCATGTCGCTCCTCTCTCTCGACAGGTGAAGATGAATGAGATATACAT
ATGCTTCTCTAGCTTTTTTTTTTTACTCTTTTTTTCTGATTGCAATAGCTAATAAACTAGCTTTTCAGCCTTGGATGAAC
TTATGTATGAAAATATTTTTGCTGTGGATTAATTTGCTATCATTTCTGTCATATGGGTTGCTGTTCATCTTTCACTCCTG
TAGTCTGTAGAACAGAACAGATCAGTGATATACTGCTACTGGTTGCATCTCACTACGGTCAGTTTACTGGCCGAGAGTTC
TTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis