Browse Element(s) Details


Os.51710.1.S1_at

Description gb:AK063495.1
DB_XREF= gi:32973513
TID=Os.51710.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D04, full insert sequence.
FL= gb:AK063495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1555011/11Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15540Os.9942.1.S1_x_at11/113+8525999..8530645HEAT repeat family protein, expressed
LOC_Os03g15540Os.48014.1.S1_x_at11/113+8525999..8530645HEAT repeat family protein, expressed
LOC_Os03g15550Os.51710.1.S1_at11/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15550OsAffx.29890.1.A1_at1/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15560Os.22830.1.S1_at7/113+8547498..8550881expressed protein
LOC_Os03g15570Os.15814.1.S1_at8/113+8551931..8556481Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g15580Os.45877.1.S1_at11/113+8560857..8575663AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016307molecular_functionphosphatidylinositol phosphate kinase activity
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51710.1.S1_at--222--7931Chr03:8541275..8541299 (25 bp)
GGATTTCATCCGCAGGGTGTTCATA
LOC_Os03g15550
Os.51710.1.S1_at--289--8591Chr03:8541332..8541356 (25 bp)
TGGTAACTATCCCACTGACTTCTTA
LOC_Os03g15550
Os.51710.1.S1_at--696--3031Chr03:8541402..8541426 (25 bp)
AATCCCGAGCATGCCTGAAACAGTG
LOC_Os03g15550
Os.51710.1.S1_at--1104--6591Chr03:8541443..8541467 (25 bp)
GTTGGTTTTACCATACGCACAGTAT
LOC_Os03g15550
Os.51710.1.S1_at--211--4571Chr03:8541544..8541568 (25 bp)
GCTCGGCCTTTTGGAAGACCTGTAA
LOC_Os03g15550
Os.51710.1.S1_at--395--7451Chr03:8541576..8541600 (25 bp)
GTGTCGAACTCCATGATTGCAAAGC
LOC_Os03g15550
Os.51710.1.S1_at--96--4871Chr03:8541599..8541623 (25 bp)
GCTAGTTAGTTCTTCCATACCACTT
LOC_Os03g15550
Os.51710.1.S1_at--647--10251Chr03:8541638..8541662 (25 bp)
TTTGTGTTCTTTCTTTGGCATCTCC
LOC_Os03g15550
Os.51710.1.S1_at--22--8511Chr03:8541653..8541677 (25 bp)
TGGCATCTCCCCAAGAATCTGAAGT
LOC_Os03g15550
Os.51710.1.S1_at--922--6111Chr03:8541727..8541751 (25 bp)
GAGTGACCCGATGGAAATCAGCTAT
LOC_Os03g15550
Os.51710.1.S1_at--184--2391Chr03:8541801..8541825 (25 bp)
AAACTGGTGCATCCTGTCAAAATCT
LOC_Os03g15550
Target Sequence 
GGATTTCATCCGCAGGGTGTTCATAAAAGAGCAGTAAGAAAAAGTCATTGGGTTCAATGGTAACTATCCCACTGACTTCT
TACATCATGAGATCCATTGGTGAAGTTTAGGCTATGATCGTATTGCCAATCCCGAGCATGCCTGAAACAGTGAAAACCGC
AAATGATGGTTGGTTTTACCATACGCACAGTATTCTGAATAATTGGGGTCAACGAGCTCCGCCGACACGCATGCTAATAT
CGGATGGATGGGAGCTAAAACTATGTATAGCTCGGCCTTTTGGAAGACCTGTAAACCGTAAGTGTCGAACTCCATGATTG
CAAAGCTAGTTAGTTCTTCCATACCACTTTTTTTCATTTCCTTTTTGTGTTCTTTCTTTGGCATCTCCCCAAGAATCTGA
AGTTTTTATTTGCTTCTTGGGGTGCTGTGCTGAATAGCATGATCTTCCAATGGAGTGACCCGATGGAAATCAGCTATTTG
TACATGTACATATTTGTCGTGTATCAGACAAATTATTACTATTTACAAACTGGTGCATCCTGTCAAAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis