Browse Element(s) Details


Os.51750.1.S1_at

Description gb:AK063603.1
DB_XREF= gi:32973621
TID=Os.51750.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C06, full insert sequence.
FL= gb:AK063603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3259011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32570Os.11048.1.A1_at11/115+18972424..18976455expressed protein
LOC_Os05g32580Os.24657.1.S1_at11/115+18988309..18995082expressed protein
LOC_Os05g32590Os.51750.1.S1_at11/115+18997886..18999918expressed protein
LOC_Os05g32600Os.2689.1.S1_a_at11/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed
LOC_Os05g32600Os.12361.1.S1_at1/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed
LOC_Os05g32610Os.35247.1.S1_at11/115+19010370..19016056Helicase conserved C-terminal domain containing protein, expressed
LOC_Os05g32620OsAffx.14923.1.S1_at11/115+19021547..19021816hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51750.1.S1_at--337--91Chr05:18998585..18998698 (25 bp)
ATTCCACAGCTTACATATTTCCAGA
LOC_Os05g32590
Os.51750.1.S1_at--631--1091Chr05:18999078..18999199 (25 bp)
AGTGGCAAGGATTCTTAGGCCTGGT
LOC_Os05g32590
Os.51750.1.S1_at--453--891Chr05:18999191..18999214 (24 bp)
AGGCCTGGTGGGATCTACATGTTGA
LOC_Os05g32590
Os.51750.1.S1_at--598--5451Chr05:18999318..18999342 (25 bp)
GAACGAGTGCAACTTTTGTACCAAT
LOC_Os05g32590
Os.51750.1.S1_at--1097--8971Chr05:18999362..18999614 (25 bp)
TGAACTGTACATTATGCCCACACCT
LOC_Os05g32590
Os.51750.1.S1_at--814--9151Chr05:18999607..18999628 (22 bp)
TGCCCACACCTGGATACCAGTTGAA
LOC_Os05g32590
Os.51750.1.S1_at--478--7431Chr05:18999640..18999664 (25 bp)
GTGTTTCACTTGCACAACCTATCAT
LOC_Os05g32590
Os.51750.1.S1_at--24--3151Chr05:18999694..18999718 (25 bp)
AATTACCACCTGACTATGTTCTTAA
LOC_Os05g32590
Os.51750.1.S1_at--1036--4411Chr05:18999755..18999779 (25 bp)
GCCAGATGCCGCTAATGAAGCTAAT
LOC_Os05g32590
Os.51750.1.S1_at--856--2691Chr05:18999772..18999796 (25 bp)
AAGCTAATTCTGTGGTTGCTAATGA
LOC_Os05g32590
Os.51750.1.S1_at--335--10231Chr05:18999845..18999869 (25 bp)
TTTGTTTTGGGTTGCTGACGAGCCT
LOC_Os05g32590
Target Sequence 
ATTCCACAGCTTACATATTTCCAGATGGATGTTAGGGACATGAGTTTGTTTGGTGATGGAACATTCGANTGTGTCCTTGA
TAAAGGTACATTGGACGCTNTGATGTGTGGCGATGATGCTCCNCTNGGNGCTTCCAAAATGCTAGCAGAAGTGGCAAGGA
TTCTTAGGCCTGGTGGGATCTACATGTTGATAACATATGGTTGTCCTAAGGAACGAGTGCAACTTTTGTACCAATCTGGA
AGCCACAAAAAAATTGAACTGTACATTATGCCCACACCTGGATACCAGTTGAAATGGAGCAAAGGTGTTTCACTTGCACA
ACCTATCATGGAGGAAGTTTCATTGACAGTGGATGGTCAATTACCACCTGACTATGTTCTTAAAGATCCAGAGTCACATT
TTATTTATATTTGCAAAAAGCCAGATGCCGCTAATGAAGCTAATTCTGTGGTTGCTAATGAAGGGGAAACCATAACTTCA
AAATGATCTTTTGTATCCTTAATTTGCATTTTGTTTTGGGTTGCTGACGAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis