Browse Element(s) Details


Os.5180.1.S1_at

Description gb:CA762394
DB_XREF= gi:25806433
DB_XREF=BR060003A10B09.ab1
CLONE=BR060003A10B09.ab1
TID=Os.5180.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.5180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0062P14.14 (OSJNBb0062P14.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g269308/113'-5' exonuclease domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26900OsAffx.28611.1.S1_at11/117+15578389..15582560Alpha-galactosidase precursor, putative
LOC_Os07g26910Os.21854.1.S1_at2/117+15586962..15589233hypothetical protein
LOC_Os07g26920NANA7+15594065..155952743'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26930Os.5180.1.S1_at8/117+15596320..155989153'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26940Os.56132.1.S1_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.47132.1.A1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.9465.1.S1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26950OsAffx.28612.1.S1_at9/117+15607946..15609721hypothetical protein
LOC_Os07g26950OsAffx.27754.1.S1_at1/117+15607946..15609721hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_x_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26974Os.22838.2.S1_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.3.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.1.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974OsAffx.28613.1.S1_at1/117+15616636..15620244expressed protein
LOC_Os07g26990OsAffx.16432.1.S1_at10/117+15622895..15624094hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5180.1.S1_at--449--2811Chr07:15598305..15598329 (25 bp)
AAGATTCATCCAAAAACCGCTCACA
LOC_Os07g26930
Os.5180.1.S1_at--854--2611Chr07:15598319..15598343 (25 bp)
AACCGCTCACACTCGATGAGGCTAT
LOC_Os07g26930
Os.5180.1.S1_at--24--2911Chr07:15598355..15598379 (25 bp)
AAGGTTTCCAGATTATCCCTTCCTG
LOC_Os07g26930
Os.5180.1.S1_at--15--10671Chr07:15598374..15598398 (25 bp)
TTCCTGCCTCTTCAAGCGAAACTTG
LOC_Os07g26930
Os.5180.1.S1_at--609--8191Chr07:15598406..15598430 (25 bp)
GGAAGTGCACTGACTGCAACCAGCT
LOC_Os07g26930
Os.5180.1.S1_at--698--10171NONE
TATTACGGAGGAGTGCCAAGCTGCA
NONE
Os.5180.1.S1_at--185--3851NONE
CTGCAGAGACTGTTTGACCTTTGGG
NONE
Os.5180.1.S1_at--2--6531NONE
GATTTTTCATTTTGTCGGTTTGCCA
NONE
Os.5180.1.S1_at--437--10291Chr07:15598692..15598716 (25 bp)
TTTGCCATTCATCGTTTCCTTTTTT
LOC_Os07g26930
Os.5180.1.S1_at--1042--3591Chr07:15598720..15598744 (25 bp)
CATTGCCCCGCAGTTGTTGTAAATA
LOC_Os07g26930
Os.5180.1.S1_at--949--2251Chr07:15598740..15598764 (25 bp)
AAATAGCCAATCACTTCATCCGTTT
LOC_Os07g26930
Target Sequence 
AAGATTCATCCAAAAACCGCTCACACTCGATGAGGCTATTGAAGCTTCAAAAGGTTTCCAGATTATCCCTTCCTGCCTCT
TCAAGCGAAACTTGGAGTTCTGGAAGTGCACTGACTGCAACCAGCTNTATTGGGAGGGTACTCAATACCNCAATGCAGTT
CAGAAGTTTTTGTCAGTATGCAACATTAGCGACTGAGGAGCGCAATACTAATATATACTATTGCCGTATTACGGAGGAGT
GCCAAGCTGCAGAGACTGTTTGACCTTTGGGGTTTTAGTCGCCCAGGATGGTGAAGATTTTTCATTTTGTCGGTTTGCCA
TTCATCGTTTCCTTTTTTTCTCATTGCCCCGCAGTTGTTGTAAATAGCCAATCACTTCATCCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis