Browse Element(s) Details


Os.51820.1.S1_at

Description gb:AK063870.1
DB_XREF= gi:32973888
TID=Os.51820.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-E08, full insert sequence.
FL= gb:AK103357.1 gb:AK063870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5787011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57830Os.50377.1.S1_at9/114+34217596..34219647expressed protein
LOC_Os04g57840Os.52864.1.S1_at11/114+34221269..34225011transposon protein, putative, unclassified, expressed
LOC_Os04g57850Os.54727.1.S1_s_at11/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57850Os.19444.1.S1_at4/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57860Os.50125.1.S1_at11/114+34231500..34235279Glycosyl hydrolase family 9 protein, expressed
LOC_Os04g57870Os.56969.1.S1_at11/114+34238005..34244668expressed protein
LOC_Os04g57870Os.51820.1.S1_at11/114+34238005..34244668expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51820.1.S1_at--391--5911Chr04:34238565..34238589 (25 bp)
GAGCTTTAGCTCTTTCTAGTAGTAG
LOC_Os04g57870
Os.51820.1.S1_at--1045--10371Chr04:34238501..34238525 (25 bp)
TTTTGAAAGAGCGACTCGGCCCGTG
LOC_Os04g57870
Os.51820.1.S1_at--801--7671Chr04:34238477..34238501 (25 bp)
GGGTTTTCGACTTCAGATGCTTGCC
LOC_Os04g57870
Os.51820.1.S1_at--847--6331Chr04:34238462..34238486 (25 bp)
GATGCTTGCCCCTTTAAGTAAATCC
LOC_Os04g57870
Os.51820.1.S1_at--29--10031Chr04:34238428..34238452 (25 bp)
TAGAGCGTTGCTTCTGGGTACCTGC
LOC_Os04g57870
Os.51820.1.S1_at--24--6991Chr04:34238411..34238435 (25 bp)
GTACCTGCAGATGGGTTCAAGGCCT
LOC_Os04g57870
Os.51820.1.S1_at--571--891Chr04:34238392..34238416 (25 bp)
AGGCCTGTAGTGTATGCTGTTGCTT
LOC_Os04g57870
Os.51820.1.S1_at--813--10351Chr04:34238353..34238377 (25 bp)
TTTTTGTCCATGCAGATCGATCCTC
LOC_Os04g57870
Os.51820.1.S1_at--698--511Chr04:34238338..34238362 (25 bp)
ATCGATCCTCCAGGCGGTTTTTATA
LOC_Os04g57870
Os.51820.1.S1_at--470--9731Chr04:34238262..34238286 (25 bp)
TCAATGTTATTTTCGCGAGGCAATT
LOC_Os04g57870
Os.51820.1.S1_at--319--7871Chr04:34238119..34238143 (25 bp)
GGTTTCTCTTAATAGCCGAGGTATT
LOC_Os04g57870
Target Sequence 
GAGCTTTAGCTCTTTCTAGTAGTAGACTGGTAGCAGAACACCCGAAGGGTTTTTTTTTTGGTTTTTTGAAAGAGCGACTC
GGCCCGTGGGTTTTCGACTTCAGATGCTTGCCCCTTTAAGTAAATCCTTTAAGACTTAGAGCGTTGCTTCTGGGTACCTG
CAGATGGGTTCAAGGCCTGTAGTGTATGCTGTTGCTTGCTTGAAATGGGAATTTTTGTCCATGCAGATCGATCCTCCAGG
CGGTTTTTATATGCCAGATAGTAGAAGAGTTCTGTAGCTAGGATGGGCTCGTTTGAATGTTCTCAATGTTATTTTCGCGA
GGCAATTTTTTTTGCCACCAGGAGGAATGTCGGAATGTAGGACAGTTGAATATATCCCATATGTAGAACAAGAGAAATTT
TACTGTCTTTGTGGATACCTAGAGAGATCATTTTTTTTTTATTTTGGTTTCTCTTAATAGCCGAGGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis