Browse Element(s) Details


Os.51833.2.S1_at

Description gb:AK107609.1
DB_XREF= gi:32992818
TID=Os.51833.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-C04, full insert sequence.
FL= gb:AK107609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0905010/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09020Os.53826.1.S1_at11/117+4701278..4710817Argonaute-like protein At2g27880, putative, expressed
LOC_Os07g09030NANA7+4716943..4717257hypothetical protein
LOC_Os07g09040OsAffx.16163.1.S1_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g09040OsAffx.16163.1.S1_x_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g09050Os.51833.1.S1_x_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.3.S1_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.2.S1_at10/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.1782.1.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.27499.3.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09060Os.1984.1.S1_at11/117+4732926..4739754methylmalonate-semialdehyde dehydrogenase, putative, expressed
LOC_Os07g09070OsAffx.16164.1.S1_at11/117+4742360..4743824hypothetical protein
LOC_Os07g09080NANA7+4748547..4750293retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09090OsAffx.28357.1.S1_at11/117+4751594..4753518hypothetical protein
LOC_Os07g09100OsAffx.5259.1.S1_at11/117+4754149..4755372hypothetical protein
LOC_Os07g09110Os.54796.1.S1_at11/117+4756823..4758571F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51833.2.S1_at--272--3531Chr07:4730444..4730468 (25 bp)
CATGCCATGATTGGGTAAGCAACTA
LOC_Os07g09050
Os.51833.2.S1_at--384--7691NONE
GGGTAAGCAACTACAGGACTAAATT
NONE
Os.51833.2.S1_at--800--3731Chr07:4730474..4730498 (25 bp)
CTAAATTGTTAGTACGAATCTGGAC
LOC_Os07g09050
Os.51833.2.S1_at--895--5251Chr07:4730489..4730513 (25 bp)
GAATCTGGACAGATACCATCTGGAC
LOC_Os07g09050
Os.51833.2.S1_at--922--7551Chr07:4730517..4730541 (25 bp)
GGGCCTGTCCAAATTAATGGTCGGT
LOC_Os07g09050
Os.51833.2.S1_at--791--7191Chr07:4730536..4730560 (25 bp)
GTCGGTACAGATGAACCATGTCTAG
LOC_Os07g09050
Os.51833.2.S1_at--569--5431Chr07:4730548..4730572 (25 bp)
GAACCATGTCTAGATTCGTGGTACT
LOC_Os07g09050
Os.51833.2.S1_at--683--3991Chr07:4730564..4730588 (25 bp)
CGTGGTACTAGGATATGTGTTATTC
LOC_Os07g09050
Os.51833.2.S1_at--442--7431Chr07:4730580..4730604 (25 bp)
GTGTTATTCATCATTTGTTACTATA
LOC_Os07g09050
Os.51833.2.S1_at--349--812Chr07:4730620..4730644 (25 bp)
ATGGAGGTAGTATCAATCAACTTCT
LOC_Os07g09050
Os.51833.2.S1_at--964--3051Chr07:4730634..4730658 (25 bp)
AATCAACTTCTGTGATACTTCAAAA
LOC_Os07g09050
Target Sequence 
CATGCCATGATTGGGTAAGCAACTACAGGACTAAATTGTTAGTACGAATCTGGACAGATACCATCTGGACAGGGGGCCTG
TCCAAATTAATGGTCGGTACAGATGAACCATGTCTAGATTCGTGGTACTAGGATATGTGTTATTCATCATTTGTTACTAT
ATTACTATATTTTGAAATGGAGGTAGTATCAATCAACTTCTGTGATACTTCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51833.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis