Browse Element(s) Details


Os.51873.1.S1_at

Description gb:AK064142.1
DB_XREF= gi:32974160
TID=Os.51873.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B04, full insert sequence.
FL= gb:AK064142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g290507/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29014OsAffx.19061.1.S1_at11/1111+16290272..16295159retrotransposon protein, putative, unclassified
LOC_Os11g29030OsAffx.7242.1.S1_s_at11/1111+16306262..16307525disease resistance protein RPM1 homolog, putative
LOC_Os11g29050OsAffx.31195.1.S1_s_at11/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29050OsAffx.31195.1.S1_at10/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29050Os.51873.1.S1_at7/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29060OsAffx.31196.1.S1_at9/1111+16334686..16337087hypothetical protein
LOC_Os11g29074OsAffx.19542.3.S1_x_at4/1111+16341468..16345666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29090OsAffx.31197.1.S1_at11/1111+16347342..16350526NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51873.1.S1_at--358--8411Chr11:16324537..16324561 (25 bp)
GGCCGAGGCAGGTAAATACGCCAAT
LOC_Os11g29050
Os.51873.1.S1_at--652--291Chr11:16324552..16324576 (25 bp)
ATACGCCAATACACCAAGAGTGGTC
LOC_Os11g29050
Os.51873.1.S1_at--1156--7791Chr11:16324573..16324597 (25 bp)
GGTCGTTTACGAGTTAGCTGGACGC
LOC_Os11g29050
Os.51873.1.S1_at--1000--1611Chr11:16324588..16324612 (25 bp)
AGCTGGACGCGGAAGCAGGTCACAT
LOC_Os11g29050
Os.51873.1.S1_at--430--2071Chr11:16324609..16324633 (25 bp)
ACATACGCCAAACGACCCAGAGTAG
LOC_Os11g29050
Os.51873.1.S1_at--334--5811Chr11:16324622..16324646 (25 bp)
GACCCAGAGTAGTCTTCTATGAATT
LOC_Os11g29050
Os.51873.1.S1_at--210--10071Chr11:16324655..16324679 (25 bp)
TAGTCTCTATTCAGAAGTGCTCGTC
LOC_Os11g29050
Os.51873.1.S1_at--443--10831NONE
TTGTGCTGTTCTGTTTTAGCTTATG
NONE
Os.51873.1.S1_at--1134--10351NONE
TTTTAGCTTATGTAGTGACTGGTGC
NONE
Os.51873.1.S1_at--235--10831Chr11:16324857..16324881 (25 bp)
TTGTGCGTGTGGTTTGAATATTTGT
NONE
Os.51873.1.S1_at--200--751Chr11:16324894..16324918 (25 bp)
ATGTTTAAACTTGCGCTCCAAGCGC
NONE
Target Sequence 
GGCCGAGGCAGGTAAATACGCCAATACACCAAGAGTGGTCGTTTACGAGTTAGCTGGACGCGGAAGCAGGTCACATACGC
CAAACGACCCAGAGTAGTCTTCTATGAATTATTATAGCTAGTCTCTATTCAGAAGTGCTCGTCGTCGTCGGTCATGTTTG
TGCTGTTCTGTTTTAGCTTATGTAGTGACTGGTGCTTGTTTGAGTTTACCCAATAAGAATGGTTTTCCTATTTGGGGATG
GTGCCATGGTGGTGAATCTGTCATCCTGCCATTATATTTAGAGTTTCTGAGATTTTTGTAAGAGTGGACAGATAAATCTT
TTGTGCGTGTGGTTTGAATATTTGTGGATTGATGCTAATGTTTAAACTTGCGCTCCAAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis