Browse Element(s) Details


OsAffx.31196.1.S1_at

Description tigr:9639.m02625
TID=OsAffx.31196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g290609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29050OsAffx.31195.1.S1_s_at11/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29050OsAffx.31195.1.S1_at10/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29050Os.51873.1.S1_at7/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29060OsAffx.31196.1.S1_at9/1111+16334686..16337087hypothetical protein
LOC_Os11g29074OsAffx.19542.3.S1_x_at4/1111+16341468..16345666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29090OsAffx.31197.1.S1_at11/1111+16347342..16350526NB-ARC domain containing protein
LOC_Os11g29100OsAffx.19062.1.S1_at11/1111+16357066..16357602hypothetical protein
LOC_Os11g29110OsAffx.19063.1.S1_at11/1111+16358534..16362735Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31196.1.S1_at--1122--9692Chr11:16335046..16335070 (25 bp)
TCAACCGGCAGGAAACCCACGGCGG
LOC_Os11g29060
OsAffx.31196.1.S1_at--41--5991Chr11:16335118..16335142 (25 bp)
GAGATTGGTTCCTGTACGCAACGGC
LOC_Os11g29060
OsAffx.31196.1.S1_at--395--9931Chr11:16335132..16335156 (25 bp)
TACGCAACGGCTCTCGATCGGGTAG
LOC_Os11g29060
OsAffx.31196.1.S1_at--1162--9491Chr11:16335143..16335167 (25 bp)
TCTCGATCGGGTAGCAGCGTTCAGA
LOC_Os11g29060
OsAffx.31196.1.S1_at--221--6951Chr11:16335153..16335177 (25 bp)
GTAGCAGCGTTCAGAAGACCAGGAG
LOC_Os11g29060
OsAffx.31196.1.S1_at--542--4051NONE
CGAGGAGGATCGATCAAGTCAAATT
NONE
OsAffx.31196.1.S1_at--526--5331Chr11:16336159..16336183 (25 bp)
GAAGTCTACGACGTGATAGCTAGGA
LOC_Os11g29060
OsAffx.31196.1.S1_at--114--951NONE
AGGAATCCAATTTTGCTTGCAGCTC
NONE
OsAffx.31196.1.S1_at--134--10731Chr11:16336702..16336891 (25 bp)
TTGCTTGCAGCTCTTTGTTAGTCCA
LOC_Os11g29060
OsAffx.31196.1.S1_at--86--5071Chr11:16336873..16336897 (25 bp)
GCAGCTCTTTGTTAGTCCATTTAGA
LOC_Os11g29060
OsAffx.31196.1.S1_at--24--4052Chr11:16337024..16337048 (25 bp)
CGATAGTATCGCGACGTTTGGACTA
LOC_Os11g29060
Target Sequence 
TCAACCGGCAGGAAACCCACGGCGGCAGCGGGTGCGACCTCACCGTCAAGGCCTTGGGGAGGAGGCGCAGGGGAGATTGG
TTCCTGTACGCAACGGCTCTCGATCGGGTAGCAGCGTTCAGAAGACCAGGAGGCGGCGGTTTTTCAGTCGCTGGCGGCGG
CTTCCTCAGGCGGCGAGGAGGATCGATCAAGTCAAATTTAAGACGGTAGATGGAGGTGAACATGGTCTTGGGGAAGTCTA
CGACGTGATAGCTAGGAAGGAATCCAATTTTGCTTGCAGCTCTTTGTTAGTCCATTTAGATAAACAGAAACGAGGTTATT
ACTTTAGTCACCCGGTGGCTTCGCACCTAGGCTATCCTCCACAAACCGGGTCTTCGGGATACTATTGCGATAGTATCGCG
ACGTTTGGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis