Browse Element(s) Details


OsAffx.19062.1.S1_at

Description tigr:9639.m02629
TID=OsAffx.19062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2910011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29060OsAffx.31196.1.S1_at9/1111+16334686..16337087hypothetical protein
LOC_Os11g29074OsAffx.19542.3.S1_x_at4/1111+16341468..16345666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29090OsAffx.31197.1.S1_at11/1111+16347342..16350526NB-ARC domain containing protein
LOC_Os11g29100OsAffx.19062.1.S1_at11/1111+16357066..16357602hypothetical protein
LOC_Os11g29110OsAffx.19063.1.S1_at11/1111+16358534..16362735Leucine Rich Repeat family protein, expressed
LOC_Os11g29120Os.52599.1.S1_at6/1111+16364628..16370327Plant protein family protein, expressed
LOC_Os11g29120Os.49821.3.A1_at1/1111+16364628..16370327Plant protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19062.1.S1_at--196--611Chr11:16357186..16357210 (25 bp)
ATGCCCTATAGCGACGGGAGGAGCA
LOC_Os11g29100
OsAffx.19062.1.S1_at--250--1071Chr11:16357315..16357339 (25 bp)
AGGGCGGTGTCTCCCATTCGTGGTG
LOC_Os11g29100
OsAffx.19062.1.S1_at--664--1511Chr11:16357370..16357394 (25 bp)
AGCAGCGCTCGGTCGCTGTAGTGCT
LOC_Os11g29100
OsAffx.19062.1.S1_at--64--8751Chr11:16357386..16357410 (25 bp)
TGTAGTGCTGGGAACGCCAACGCGC
LOC_Os11g29100
OsAffx.19062.1.S1_at--340--5911Chr11:16357416..16357440 (25 bp)
GAGCTCGAGGGCACACCCAGTGCGC
LOC_Os11g29100
OsAffx.19062.1.S1_at--221--4431Chr11:16357470..16357494 (25 bp)
GCCATGGACCATCTCGAGTCGAGCT
LOC_Os11g29100
OsAffx.19062.1.S1_at--129--6111Chr11:16357485..16357509 (25 bp)
GAGTCGAGCTTCCTCGCCAACACAT
LOC_Os11g29100
OsAffx.19062.1.S1_at--1020--4391Chr11:16357500..16357524 (25 bp)
GCCAACACATTCAACTGCCTTTGAG
LOC_Os11g29100
OsAffx.19062.1.S1_at--1010--9691Chr11:16357510..16357534 (25 bp)
TCAACTGCCTTTGAGGTCCAAAACC
LOC_Os11g29100
OsAffx.19062.1.S1_at--368--9852Chr11:16357538..16357562 (25 bp)
TAAATAGCCCCAAGATCCATGCAGC
LOC_Os11g29100
OsAffx.19062.1.S1_at--653--291Chr11:16357541..16357565 (25 bp)
ATAGCCCCAAGATCCATGCAGCGTG
LOC_Os11g29100
Target Sequence 
ATGCCCTATAGCGACGGGAGGAGCAGCGCCCGGCCGCTGCAGCAAGGGCGACGCCCGGTCGCGGCGGGAAGGGTGGCGTG
TAGCAGGCAGGCGACGACGGCGGCATCCAGGGCAGGAGGCCACGAGGCGAGGGCGGTGTCTCCCATTCGTGGTGGGAGGG
GTGGCGCCCGGTCGCGACGGGAGGAGCAGCGCTCGGTCGCTGTAGTGCTGGGAACGCCAACGCGCCGTGGGAGCTCGAGG
GCACACCCAGTGCGCGGCCGTGGCGTCGAGCTCGTGTTCCGGCCGCCATGGACCATCTCGAGTCGAGCTTCCTCGCCAAC
ACATTCAACTGCCTTTGAGGTCCAAAACCCCCTAAATAGCCCCAAGATCCATGCAGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis