Browse Element(s) Details


Os.52599.1.S1_at

Description gb:AK068263.1
DB_XREF= gi:32978281
TID=Os.52599.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149N04, full insert sequence.
FL= gb:AK068263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g291206/11Plant protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29074OsAffx.19542.3.S1_x_at4/1111+16341468..16345666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29090OsAffx.31197.1.S1_at11/1111+16347342..16350526NB-ARC domain containing protein
LOC_Os11g29100OsAffx.19062.1.S1_at11/1111+16357066..16357602hypothetical protein
LOC_Os11g29110OsAffx.19063.1.S1_at11/1111+16358534..16362735Leucine Rich Repeat family protein, expressed
LOC_Os11g29120Os.52599.1.S1_at6/1111+16364628..16370327Plant protein family protein, expressed
LOC_Os11g29120Os.49821.3.A1_at1/1111+16364628..16370327Plant protein family protein, expressed
LOC_Os11g29130OsAffx.17858.1.S1_at5/1111+16383767..16386672hypothetical protein
LOC_Os11g29140Os.10180.1.S1_at11/1111+16387470..16388232expressed protein
LOC_Os11g29140Os.53378.1.S1_s_at2/1111+16387470..16388232expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52599.1.S1_at--868--6111Chr11:16364880..16364904 (25 bp)
GAGTGTTGAAAGCTTGGTCACCACA
LOC_Os11g29120
Os.52599.1.S1_at--748--10851Chr11:16364867..16364891 (25 bp)
TTGGTCACCACAGGCAAGACACGAT
LOC_Os11g29120
Os.52599.1.S1_at--396--3351Chr11:16364848..16364872 (25 bp)
CACGATTCTGTCTAACTGGAACTGT
LOC_Os11g29120
Os.52599.1.S1_at--1061--5911Chr11:16364802..16364826 (25 bp)
GAGCAGTGAACCACATTTTGGCTAG
LOC_Os11g29120
Os.52599.1.S1_at--1047--8151Chr11:16364753..16364777 (25 bp)
GGAAAACCATACACGTTCTGTCTAT
LOC_Os11g29120
Os.52599.1.S1_at--1007--8291Chr11:16364671..16364695 (25 bp)
GGCTACATTGACTGGAATCCTTAAT
LOC_Os11g29120
Os.52599.1.S1_at--976--3311NONE
CATGCGGACGCAGAACGAACTAGGT
NONE
Os.52599.1.S1_at--291--2371NONE
AAACCCGACCTAGAGTGAGACGAAT
NONE
Os.52599.1.S1_at--758--4271NONE
CCTGACCAGCAGATGACTTACTAAG
NONE
Os.52599.1.S1_at--682--1831NONE
ACTAAGAAGACAGCCGGACCGATCG
NONE
Os.52599.1.S1_at--833--2451NONE
AACAACACGGCCACATACTGATGAA
NONE
Target Sequence 
GAGTGTTGAAAGCTTGGTCACCACAGGCAAGACACGATTCTGTCTAACTGGAACTGTTAAGAGAGGCTAGAATTAGGAGA
GCAGTGAACCACATTTTGGCTAGATTGGTCANCTANGAATTTCAGAGGGAAAACCATACACGTTCTGTCTATATTAGCTA
TTCATTTGTTAAAGATTTGAGTGCGGCATGTGGTGTGTAAGTATGATGAGGCTACATTGACTGGAATCCTTAATACAGGA
TATATTGCCTTTANANNNNANANANANNNNANNNNAAACATGCCTGTCGGCCCCCTCCGACCAGACCAATAAAAAATCCA
GCAAACACATGCATGCGGACGCAGAACGAACTAGGTCGACAAACCCGACCTAGAGTGAGACGAATAAAAAATGACCGGCG
GTCGAAAAACAACGGGATAGAGAGGAACACAGCGTGAGATAACCAAATTAACCAGCAGGAAAAACACCCTCCTGACCAGC
AGATGACTTACTAAGAAGACAGCCGGACCGATCGCCTACCAACAACACGGCCACATACTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis