Browse Element(s) Details


Os.10180.1.S1_at

Description gb:AK069452.1
DB_XREF= gi:32979476
TID=Os.10180.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019F19, full insert sequence.
FL= gb:AK069452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2914011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29110OsAffx.19063.1.S1_at11/1111+16358534..16362735Leucine Rich Repeat family protein, expressed
LOC_Os11g29120Os.52599.1.S1_at6/1111+16364628..16370327Plant protein family protein, expressed
LOC_Os11g29120Os.49821.3.A1_at1/1111+16364628..16370327Plant protein family protein, expressed
LOC_Os11g29130OsAffx.17858.1.S1_at5/1111+16383767..16386672hypothetical protein
LOC_Os11g29140Os.10180.1.S1_at11/1111+16387470..16388232expressed protein
LOC_Os11g29140Os.53378.1.S1_s_at2/1111+16387470..16388232expressed protein
LOC_Os11g29150Os.56347.1.S1_at11/1111+16395771..16397574expressed protein
LOC_Os11g29160NANA11+16402859..16404366hypothetical protein
LOC_Os11g29170NANA11+16407053..16408821retrotransposon protein, putative, unclassified
LOC_Os11g29180NANA11+16412969..16413754retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10180.1.S1_at--262--5651Chr11:16387844..16387868 (25 bp)
GACAGCGGGATCTCCACAACAGCAG
LOC_Os11g29140
Os.10180.1.S1_at--735--10352Chr11:16388003..16388027 (25 bp)
TTTTTTGGCTTGGAGGCATCGGCTC
LOC_Os11g29140
Os.10180.1.S1_at--344--8472Chr11:16388008..16388032 (25 bp)
TGGCTTGGAGGCATCGGCTCGAATT
LOC_Os11g29140
Os.10180.1.S1_at--90--6352Chr11:16388062..16388086 (25 bp)
GATCCATACACCTCAAAGGTGCCGG
LOC_Os11g29140
Os.10180.1.S1_at--258--8891Chr11:16388106..16388130 (25 bp)
TGAGAGAACTCAAAGGTGCTGCCTG
LOC_Os11g29140
Os.10180.1.S1_at--944--2531Chr11:16388112..16388136 (25 bp)
AACTCAAAGGTGCTGCCTGCGAGGT
LOC_Os11g29140
Os.10180.1.S1_at--607--3951Chr11:16388139..16388163 (25 bp)
CGGTTGCCAAATCCGGCACCTATAT
LOC_Os11g29140
Os.10180.1.S1_at--427--10871Chr11:16388169..16388193 (25 bp)
TTGGAACTGGCACCAAATAGCCTTT
LOC_Os11g29140
Os.10180.1.S1_at--716--4351Chr11:16388181..16388205 (25 bp)
CCAAATAGCCTTTATGTAGTAGTGT
LOC_Os11g29140
Os.10180.1.S1_at--30--6952Chr11:16388196..16388220 (25 bp)
GTAGTAGTGTTATTCTCTAGCCTGA
LOC_Os11g29140
Os.10180.1.S1_at--288--10211Chr11:16388206..16388230 (25 bp)
TATTCTCTAGCCTGAGCATTCCGCG
LOC_Os11g29140
Target Sequence 
GACAGCGGGATCTCCACAACAGCAGCGGCAGGCTCCCCACGGCGGCGGTGCTTTTGAGTAATTTTTGTGATTGTTTTGTG
TGATTTTTGTTGGTGATGATTGTGATTGCGGTAAGTGGGTGATGTGAATGTNATNGATTTGTGATTTTTTTATTGATTTT
TTTTTTTTGGCTTGGAGGCATCGGCTCGAATTGAGCCGAGCCGAGCCTTTTTTTTTTTTGGCGATCCATACACCTCAAAG
GTGCCGGTTCTTGAAGTCGNNACCTTTGAGAGAACTCAAAGGTGCTGCCTGCGAGGTGCCGGTTGCCAAATCCGGCACCT
ATATGGGGTTTGGAACTGGCACCAAATAGCCTTTATGTAGTAGTGTTATTCTCTAGCCTGAGCATTCCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis