Browse Element(s) Details


Os.56347.1.S1_at

Description gb:AK109900.1
DB_XREF= gi:32995109
TID=Os.56347.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-F07, full insert sequence.
FL= gb:AK109900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2915011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29130OsAffx.17858.1.S1_at5/1111+16383767..16386672hypothetical protein
LOC_Os11g29140Os.10180.1.S1_at11/1111+16387470..16388232expressed protein
LOC_Os11g29140Os.53378.1.S1_s_at2/1111+16387470..16388232expressed protein
LOC_Os11g29150Os.56347.1.S1_at11/1111+16395771..16397574expressed protein
LOC_Os11g29160NANA11+16402859..16404366hypothetical protein
LOC_Os11g29170NANA11+16407053..16408821retrotransposon protein, putative, unclassified
LOC_Os11g29180NANA11+16412969..16413754retrotransposon protein, putative, unclassified
LOC_Os11g29190Os.7926.1.S1_at11/1111+16415978..1641805640S ribosomal protein S5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56347.1.S1_at--77--7771Chr11:16396980..16397004 (25 bp)
GGTGAATCGCATCCAAACTCATCAA
LOC_Os11g29150
Os.56347.1.S1_at--739--2531Chr11:16396995..16397019 (25 bp)
AACTCATCAATCTATTCACCCATAT
LOC_Os11g29150
Os.56347.1.S1_at--1082--2811Chr11:16397038..16397062 (25 bp)
AAGTGACTTTTCTCATGACGTCCTC
LOC_Os11g29150
Os.56347.1.S1_at--57--8951Chr11:16397053..16397077 (25 bp)
TGACGTCCTCAGCTAGCTAGATCAT
LOC_Os11g29150
Os.56347.1.S1_at--57--1271Chr11:16397071..16397095 (25 bp)
AGATCATCAACCATATACTCACCAC
LOC_Os11g29150
Os.56347.1.S1_at--663--2111Chr11:16397104..16397128 (25 bp)
ACATGTACACCTAGCCTGATTGGCA
LOC_Os11g29150
Os.56347.1.S1_at--319--4311Chr11:16397163..16397187 (25 bp)
CCTATCACATACCATTATACTGCCG
LOC_Os11g29150
Os.56347.1.S1_at--237--2291Chr11:16397257..16397281 (25 bp)
AAATGCTTGCCCGTGTTCTAGTACC
LOC_Os11g29150
Os.56347.1.S1_at--154--6071Chr11:16397287..16397311 (25 bp)
GAGTTCTTTGCCAGAGTTGCTTTGT
LOC_Os11g29150
Os.56347.1.S1_at--364--10651Chr11:16397360..16397384 (25 bp)
TTCCTTGATTATAGCCGACCAGTCT
LOC_Os11g29150
Os.56347.1.S1_at--693--3451Chr11:16397379..16397403 (25 bp)
CAGTCTCTCGGTCAGCCATCAATGA
LOC_Os11g29150
Target Sequence 
GGTGAATCGCATCCAAACTCATCAATCTATTCACCCATATATGGGATCATGACTTGTCAAGTGACTTTTCTCATGACGTC
CTCAGCTAGCTAGATCATCAACCATATACTCACCACAGGCTATCACATGTACACCTAGCCTGATTGGCAATATTCCACCA
TACAACCATTGTAGTACCATATACCTATCACATACCATTATACTGCCGATCAATCCACCACATCTCACAATGTGCATCAC
CAGTTTCATACATGCATGTGTCAAGAGAAAAGGAAAAAAATGCTTGCCCGTGTTCTAGTACCAATATGAGTTCTTTGCCA
GAGTTGCTTTGTTGGTGTGCTTATACACATCATATAAATATGTCTAAATAAAAGTTTAGCTTCCTTGATTATAGCCGACC
AGTCTCTCGGTCAGCCATCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis