Browse Element(s) Details


OsAffx.19063.1.S1_at

Description tigr:9639.m02630
TID=OsAffx.19063.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2911011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29060OsAffx.31196.1.S1_at9/1111+16334686..16337087hypothetical protein
LOC_Os11g29074OsAffx.19542.3.S1_x_at4/1111+16341468..16345666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29090OsAffx.31197.1.S1_at11/1111+16347342..16350526NB-ARC domain containing protein
LOC_Os11g29100OsAffx.19062.1.S1_at11/1111+16357066..16357602hypothetical protein
LOC_Os11g29110OsAffx.19063.1.S1_at11/1111+16358534..16362735Leucine Rich Repeat family protein, expressed
LOC_Os11g29120Os.52599.1.S1_at6/1111+16364628..16370327Plant protein family protein, expressed
LOC_Os11g29120Os.49821.3.A1_at1/1111+16364628..16370327Plant protein family protein, expressed
LOC_Os11g29130OsAffx.17858.1.S1_at5/1111+16383767..16386672hypothetical protein
LOC_Os11g29140Os.10180.1.S1_at11/1111+16387470..16388232expressed protein
LOC_Os11g29140Os.53378.1.S1_s_at2/1111+16387470..16388232expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19063.1.S1_at--898--4171Chr11:16361783..16361807 (25 bp)
CCCAACCTATCAACTTTCACAATTA
LOC_Os11g29110
OsAffx.19063.1.S1_at--356--10491Chr11:16361805..16361829 (25 bp)
TTACAGCAGACAATTCTAGTTCTAG
LOC_Os11g29110
OsAffx.19063.1.S1_at--97--10051Chr11:16361821..16361845 (25 bp)
TAGTTCTAGCCACGGCTTTGGGCCT
LOC_Os11g29110
OsAffx.19063.1.S1_at--630--5331Chr11:16362029..16362053 (25 bp)
GAAGTCCATTCAAGGTGCATTCGCC
LOC_Os11g29110
OsAffx.19063.1.S1_at--273--7331Chr11:16362043..16362067 (25 bp)
GTGCATTCGCCTTTGTTGAGAAGCT
LOC_Os11g29110
OsAffx.19063.1.S1_at--308--7591Chr11:16362187..16362211 (25 bp)
GGGCTCTCAGAATCCTGATCATCAA
LOC_Os11g29110
OsAffx.19063.1.S1_at--483--3331Chr11:16362232..16362256 (25 bp)
CACTCGATGTATTGCTGGAATCTGA
LOC_Os11g29110
OsAffx.19063.1.S1_at--819--4711Chr11:16362245..16362269 (25 bp)
GCTGGAATCTGACCATTTGCCGGAT
LOC_Os11g29110
OsAffx.19063.1.S1_at--36--1531Chr11:16362303..16362327 (25 bp)
AGCATCAAATCGCTGCCATGGAATA
LOC_Os11g29110
OsAffx.19063.1.S1_at--425--4411Chr11:16362317..16362341 (25 bp)
GCCATGGAATATGGACCGGGTCCTA
LOC_Os11g29110
OsAffx.19063.1.S1_at--366--8091Chr11:16362329..16362353 (25 bp)
GGACCGGGTCCTAGTTCTTGAGAGC
LOC_Os11g29110
Target Sequence 
CCCAACCTATCAACTTTCACAATTACAGCAGACAATTCTAGTTCTAGCCACGGCTTTGGGCCTCTACTTCAGCTAGAAAT
AACTGACTGCAAGAAACTGAAGTCCATTCAAGGTGCATTCGCCTTTGTTGAGAAGCTGTACATTGAGAAATGCCACAGTT
CTCTGAAACTGCATAATGGCAATGCGATGAAATCACTCCACACTCTGCATATCGACAGCGTCGCAACGCATATGGATCCA
TTTCTGCTTGGCCTCCGGGCTCTCAGAATCCTGATCATCAAAGACAGCGAAGAACTGAACTCACTCGATGTATTGCTGGA
ATCTGACCATTTGCCGGATACACTGGAGCAGCTGCAGTTGATCAACTGCAACAGCATCAAATCGCTGCCATGGAATATGG
ACCGGGTCCTAGTTCTTGAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis