Browse Element(s) Details


Os.51897.1.S1_x_at

Description gb:AK064214.1
DB_XREF= gi:32974232
TID=Os.51897.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F04, full insert sequence.
FL= gb:AK064214.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0488011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04830Os.46715.1.S1_x_at1/1112+2068534..2074314retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04830Os.46715.1.S1_at1/1112+2068534..2074314retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04830OsAffx.22947.2.S1_x_at1/1112+2068534..2074314retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04840NANA12+2078325..2083611retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04850NANA12+2085426..2085609hypothetical protein
LOC_Os12g04860Os.52432.1.S1_at10/1112+2086516..2089629DTW domain containing protein, expressed
LOC_Os12g04864NANA12+2089476..2089657NA
LOC_Os12g04870OsAffx.19498.1.S1_at11/1112+2090556..2091092hypothetical protein
LOC_Os12g04880Os.51897.1.S1_x_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04880Os.26788.1.S1_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04880Os.6588.1.A1_x_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04890OsAffx.29313.1.S1_at1/1112+2100030..2101631hypothetical protein
LOC_Os12g04900Os.27691.1.S1_x_at1/1112+2106317..2107273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04910Os.27691.1.S1_x_at1/1112+2107523..2112084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04920Os.37680.1.S1_at2/1112+2115499..2117461GRF zinc finger family protein
LOC_Os12g04930Os.14713.1.S1_at11/1112+2120024..2123287SPRY domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51897.1.S1_x_at--182--7071Chr12:2092942..2092966 (25 bp)
GTAAGATGATGCAAGCTGCCAAGGT
LOC_Os12g04880
Os.51897.1.S1_x_at--1046--6391Chr12:2092970..2092994 (25 bp)
GATCGGGACAGGAAGTCAGCTCAAA
LOC_Os12g04880
Os.51897.1.S1_x_at--1052--2532Chr12:2093003..2093027 (25 bp)
AACTAATGGTATGGGTGGGAGCACA
LOC_Os12g04880
Os.51897.1.S1_x_at--412--10271Chr12:2095727..2095751 (25 bp)
TTTGAAGATGCGTTTCCCTGGAGCC
LOC_Os12g04880
Os.51897.1.S1_x_at--381--951Chr12:2095794..2095818 (25 bp)
AGGAACCTGCCTGTCACTATGGGTA
LOC_Os12g04880
Os.51897.1.S1_x_at--688--6472Chr12:2095919..2095943 (25 bp)
GATACAGACTACTACTCCAGGAAGA
LOC_Os12g04880
Os.51897.1.S1_x_at--893--9372Chr12:2095976..2096000 (25 bp)
TCGTTACCATGGGTCCGAGTGGGTT
LOC_Os12g04880
Os.51897.1.S1_x_at--262--6972Chr12:2096003..2096027 (25 bp)
GTAGCCCAGCTATCTGTTGTACAGC
LOC_Os12g04880
Os.51897.1.S1_x_at--429--9872Chr12:2096022..2096046 (25 bp)
TACAGCTGGCTACTGTGTGTGTCGT
LOC_Os12g04880
Os.51897.1.S1_x_at--553--2031Chr12:2096096..2096120 (25 bp)
ACTATGATTTGGCATCTCGGTGGCG
LOC_Os12g04880
Os.51897.1.S1_x_at--553--4692Chr12:2096127..2096151 (25 bp)
GCGGAAGGCTCAATCCTGTTGGGTT
LOC_Os12g04880
Target Sequence 
GTAAGATGATGCAAGCTGCCAAGGTGGAGATCGGGACAGGAAGTCAGCTCAAAGAGGAACAAACTAATGGTATGGGTGGG
AGCACACAAACCCACCCCTCTGCATGAACAAGCCATATGGGAGGATCTGGAAGATTTGAAGATGCGTTTCCCTGGAGCCT
TGGCTTGGGGACAAGCCAAATTTCATGGGGAGGGGATTGTCAGGAACCTGCCTGTCACTATGGGTACTGAAGAAGGAGAA
CCTGATGAAGCAGAAGCTGAACAGGGAGAGAAGGAACCTGAAGAAGGAGAACCTGATGAAGCAGAAGCTGAAGTCCAGGA
GGAGGAGATACAGACTACTACTCCAGGAAGAGCAAGACCCACAAGAGGGCCAAAGCCCAATCCTCGTTACCATGGGTCCG
AGTGGGTTGCGTAGCCCAGCTATCTGTTGTACAGCTGGCTACTGTGTGTGTCGTGTGAGTAGGGAGATGCTACTGTATAA
ATAAGATGAACTCGAGGAAGACAACTATGATTTGGCATCTCGGTGGCGGTGGCGGCGGAAGGCTCAATCCTGTTGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51897.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis