Browse Element(s) Details


Os.51899.1.S1_at

Description gb:AK064218.1
DB_XREF= gi:32974236
TID=Os.51899.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F09, full insert sequence.
FL= gb:AK064218.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3023011/11RXO1 disease resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30190OsAffx.30096.1.S1_x_at11/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30190Os.56726.1.S1_x_at10/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30200Os.54184.1.S1_at11/119+18380039..18383341expressed protein
LOC_Os09g30210Os.29965.1.S1_at11/119+18386471..18390683expressed protein
LOC_Os09g30220Os.50526.1.S1_at11/119+18390893..18396838NB-ARC domain containing protein, expressed
LOC_Os09g30230Os.51899.1.S1_at11/119+18401209..18403263RXO1 disease resistance protein, putative, expressed
LOC_Os09g30240Os.56193.1.S1_at11/119+18410577..18412162Phosphofructokinase family protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_x_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.17117.1.S1_x_at1/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30260Os.10456.1.S1_at9/119+18426051..18427082expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51899.1.S1_at--516--5431Chr09:18401751..18401775 (25 bp)
GAACCTGCTAACCTGCCTGGAGAAT
LOC_Os09g30230
Os.51899.1.S1_at--1011--6131Chr09:18401696..18401720 (25 bp)
GAGGGTCAGGTTGGGTTTTCATCTA
LOC_Os09g30230
Os.51899.1.S1_at--795--6371Chr09:18401656..18401680 (25 bp)
GATCCTGGTTGGTTCACTGTGACAA
LOC_Os09g30230
Os.51899.1.S1_at--312--5551Chr09:18401605..18401629 (25 bp)
GAAACGGTGTTCATCTTTGGCTCAC
LOC_Os09g30230
Os.51899.1.S1_at--549--3051Chr09:18401564..18401588 (25 bp)
AATCGATAGTGTACATTCCCTCCGG
LOC_Os09g30230
Os.51899.1.S1_at--559--2051Chr09:18401509..18401533 (25 bp)
ACTTGGTCACCATCTTTTGTTTCTG
LOC_Os09g30230
Os.51899.1.S1_at--485--1091Chr09:18401462..18401486 (25 bp)
AGTGGCAACTTCTCTACATTATTTC
LOC_Os09g30230
Os.51899.1.S1_at--234--8651Chr09:18401367..18401391 (25 bp)
TGGGCATCTTGACCAGAAGCAGCTC
LOC_Os09g30230
Os.51899.1.S1_at--812--9291Chr09:18401335..18401359 (25 bp)
TCCCCTTTTGTCAGAACTCTCAGAA
LOC_Os09g30230
Os.51899.1.S1_at--336--1431Chr09:18401314..18401338 (25 bp)
AGAAACAATGTTCCAGCGTTCACTG
LOC_Os09g30230
Os.51899.1.S1_at--95--6531Chr09:18401289..18401313 (25 bp)
GATTTGCAGCTGCTACCTGACTAGA
LOC_Os09g30230
Target Sequence 
GAACCTGCTAACCTGCCTGGAGAATCCAGCACCAACCCACAATGGCGCATGTTAGGAGGGTCAGGTTGGGTTTTCATCTA
ACCCAGTTTGCAGAGGATCCTGGTTGGTTCACTGTGACAAAAACTTCAGAATCTACTCCCGTTACTGAAACGGTGTTCAT
CTTTGGCTCACTGAATTGGAGATTGTGAATCGATAGTGTACATTCCCTCCGGTTTCTTTGCGAATGGAGCTTTTGGCAAG
GTACTTGGTCACCATCTTTTGTTTCTGGTGCCACAACAAAATACTGGCAAGTGGCAACTTCTCTACATTATTTCACTGGG
AAGGTAACTATAATGTCAATTGGGATTTATCACGGTAAACTTCATGAGGAACAATTTTCCTCCATGGGCATCTTGACCAG
AAGCAGCTCCCCTCAGTCCCCTTTTGTCAGAACTCTCAGAAACAATGTTCCAGCGTTCACTGGATTTGCAGCTGCTACCT
GACTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis