Browse Element(s) Details


Os.519.1.S1_at

Description gb:AK071240.1
DB_XREF= gi:32981263
TID=Os.519.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative heat shock protein, 18K - maize (P0489A01.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085O10, full insert sequence.
FL= gb:AK071240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0886011/1117.5 kDa class II heat shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08820OsAffx.23166.1.S1_at11/111+4428540..4430481PHD-finger family protein, expressed
LOC_Os01g08830Os.9695.1.S1_at10/111+4430913..4434756F-box domain containing protein, expressed
LOC_Os01g08840NANA1+4437703..4438170hypothetical protein
LOC_Os01g08850Os.33427.1.S1_at11/111+4441472..4445170expressed protein
LOC_Os01g08860Os.519.1.S1_at11/111+4445845..444667817.5 kDa class II heat shock protein, putative, expressed
LOC_Os01g08870Os.31700.3.A1_at2/111+4450519..4450806expressed protein
LOC_Os01g08880Os.31700.4.S1_x_at1/111+4451557..4453886hypothetical protein
LOC_Os01g08890NANA1+4456152..4463843hypothetical protein
LOC_Os01g08900NANA1+4467272..4470227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g08910Os.10703.2.S1_x_at1/111+4470545..4474530retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0006972biological_processhyperosmotic response
GO:0009408biological_processresponse to heat
GO:0005829cellular_componentcytosol
GO:0051082molecular_functionunfolded protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.519.1.S1_at--427--7731Chr01:4446368..4446392 (25 bp)
GGTGGACATGCCTGGGCTCAAGTCC
LOC_Os01g08860
Os.519.1.S1_at--914--971Chr01:4446258..4446282 (25 bp)
AGGAGTCGTGCAAGTACCTGCGGAT
LOC_Os01g08860
Os.519.1.S1_at--397--2831Chr01:4446217..4446241 (25 bp)
AAGTTCATGCGCAAGTTCGTGCTCC
LOC_Os01g08860
Os.519.1.S1_at--472--2811Chr01:4446172..4446196 (25 bp)
AAGATCTCCGCCGTGTGCCAGGACG
LOC_Os01g08860
Os.519.1.S1_at--1139--7811Chr01:4446083..4446107 (25 bp)
GGTCAAGGTCGCGTGATGAGATTCC
LOC_Os01g08860
Os.519.1.S1_at--1149--6291Chr01:4446069..4446093 (25 bp)
GATGAGATTCCGCATCTCTCTGCAT
LOC_Os01g08860
Os.519.1.S1_at--376--9151Chr01:4446043..4446067 (25 bp)
TGCGTCGCTGCGTGGATCAAAGAAT
LOC_Os01g08860
Os.519.1.S1_at--2--6131Chr01:4445977..4446001 (25 bp)
GAGTGTTCATCTTTATCGTTTGCTA
LOC_Os01g08860
Os.519.1.S1_at--780--951Chr01:4445940..4445964 (25 bp)
AGGACATGGTGGTCTGTATGCCGTA
LOC_Os01g08860
Os.519.1.S1_at--671--7171Chr01:4445929..4445953 (25 bp)
GTCTGTATGCCGTATGCGATGTGAT
LOC_Os01g08860
Os.519.1.S1_at--1086--5231Chr01:4445848..4445872 (25 bp)
GAATAAATATACTCTGCATCTTTTG
LOC_Os01g08860
Target Sequence 
GGTGGACATGCCTGGGCTCAAGTCCTCCGACATCAAGGTGCAGGTGGAGGAGGAGAGGCTNCTGGTGATCAGCGGGGAGC
GGCGGCGCGGCGGCGGGGAGGAGGAGAAGGAGGAGTCGTGCAAGTACCTGCGGATGGAGCGGCGGATGGGCAAGTTCATG
CGCAAGTTCGTGCTCCCCGACAACGCCGACGTCGACAAGATCTCCGCCGTGTGCCAGGACGGCGTGCTCACCGTCACCGT
CGAGAAGCTCCCGCCGCCGGAGCCCAAGAAGCCCAAGACCATCGAGGTCAAGGTCGCGTGATGAGATTCCGCATCTCTCT
GCATCTGCGTCGCTGCGTGGATCAAAGAATCGAAGCTTGAGTTGAGTGAGTTGTGACTAGTAGTATGAGTAGAGTGTTCA
TCTTTATCGTTTGCTACGTGAGAATGTGAGGACATGGTGGTCTGTATGCCGTATGCGATGTGATGATGATGGATGGTTTG
ATGTTTGGTAATGGAAATGGGGATGTTCTGCTGCTTATCTGAATAAATATACTCTGCATCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis