Browse Element(s) Details


Os.51914.1.A1_at

Description gb:AK064266.1
DB_XREF= gi:32974284
TID=Os.51914.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-D12, full insert sequence.
FL= gb:AK064266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3780011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37780Os.53173.1.S1_at11/115+22039657..22040582expressed protein
LOC_Os05g37790OsAffx.14999.1.S1_at11/115+22047186..22047623hypothetical protein
LOC_Os05g37800Os.51914.1.A1_at11/115+22056861..22059120expressed protein
LOC_Os05g37810OsAffx.15200.2.S1_x_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.2.S1_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.3.S1_s_at4/115+22066811..22067634hypothetical protein
LOC_Os05g37820Os.9560.1.S1_at11/115+22072792..22076529Major Facilitator Superfamily protein, expressed
LOC_Os05g37830Os.14077.1.S1_at10/115+22077057..22079140expressed protein
LOC_Os05g37840OsAffx.15001.1.S1_at11/115+22080338..22080862hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51914.1.A1_at--910--1891Chr05:22058593..22058617 (25 bp)
ACGTCGCGGACAGGGCCTTCTCGGA
LOC_Os05g37800
Os.51914.1.A1_at--1122--5151Chr05:22058647..22058671 (25 bp)
GCAACGCCAGGATGCAGCGGTGCAA
LOC_Os05g37800
Os.51914.1.A1_at--152--8431Chr05:22058913..22058937 (25 bp)
GGCCGGCAACTGAGGTCGCAATCGT
LOC_Os05g37800
Os.51914.1.A1_at--416--7231Chr05:22058927..22058951 (25 bp)
GTCGCAATCGTTCGCGCGTAGCATG
LOC_Os05g37800
Os.51914.1.A1_at--216--4651Chr05:22058942..22058966 (25 bp)
GCGTAGCATGCTCCGGCTGTACTGA
LOC_Os05g37800
Os.51914.1.A1_at--391--3811Chr05:22058952..22058976 (25 bp)
CTCCGGCTGTACTGAGTTGTGTTTT
LOC_Os05g37800
Os.51914.1.A1_at--60--1251Chr05:22058966..22058990 (25 bp)
AGTTGTGTTTTTCGTTGCAGCAGTA
LOC_Os05g37800
Os.51914.1.A1_at--655--6191Chr05:22058994..22059018 (25 bp)
GAGGCTCAATGGCAATGGTATAACC
LOC_Os05g37800
Os.51914.1.A1_at--1124--10331Chr05:22059030..22059054 (25 bp)
TTTACATCCTTGTGTAGCGCAGTGT
LOC_Os05g37800
Os.51914.1.A1_at--1102--1631Chr05:22059045..22059069 (25 bp)
AGCGCAGTGTTAATTCCGTTCATTT
LOC_Os05g37800
Os.51914.1.A1_at--881--7871Chr05:22059095..22059119 (25 bp)
GGTTTATCTCATAATCACCTCTTAA
LOC_Os05g37800
Target Sequence 
ACGTCGCGGACAGGGCCTTCTCGGAGCCGTGGCCGGAGCTGCGCGTCCGCGGGTGCAACGCCAGGATGCAGCGGTGCAAC
AGCAACGCCAGCGCGCGGAGCTCTTTCAGCAGCAACAGCGGCGGCCTCGGCAGCTCGAGGCGCAGCTACGTCGACGGCAA
CGGCAACGTCGTCAAGCGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTG
ACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAGCGCCAGCGGCCGGCGCGCCCCGGGGCTACCGGCCAAAGGC
GGCCGGCAACTGAGGTCGCAATCGTTCGCGCGTAGCATGCTCCGGCTGTACTGAGTTGTGTTTTTCGTTGCAGCAGTAGT
GGAGGCTCAATGGCAATGGTATAACCATAAATCTTTTTTTACATCCTTGTGTAGCGCAGTGTTAATTCCGTTCATTTGGG
GGGTTGGATTAAGGGGAATGGAGGTTTATCTCATAATCACCTCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51914.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis