Browse Element(s) Details


Os.51915.2.S1_at

Description gb:AK064270.1
DB_XREF= gi:32974288
TID=Os.51915.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E07, full insert sequence.
FL= gb:AK064270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4955011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49524Os.32285.1.S1_at11/113+28142975..28145688UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g49530Os.14919.1.S1_at5/113+28150804..28156921hypothetical protein
LOC_Os03g49530Os.56216.1.S1_at1/113+28150804..28156921hypothetical protein
LOC_Os03g49540NANA3+28162617..28165110transposon protein, putative, Mutator sub-class
LOC_Os03g49550Os.51915.2.S1_at11/113+28168877..28170460UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g49560NANA3+28173871..28174470hypothetical protein
LOC_Os03g49570Os.10801.1.S1_a_at11/113+28178462..28183265phosphate translocator, putative, expressed
LOC_Os03g49580Os.16924.1.S1_at11/113+28185367..28188518Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os03g49590OsAffx.13424.1.S1_at11/113+28188570..28189223hypothetical protein
LOC_Os03g49600Os.5072.1.S1_at11/113+28189476..28194516Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51915.2.S1_at--49--7491Chr03:28169949..28169973 (25 bp)
GTGGGCTCCTCAGGTGAGCATACTG
LOC_Os03g49550
Os.51915.2.S1_at--366--6391Chr03:28170066..28170090 (25 bp)
GATCTTAGGCGACCAAGGCCCGAAC
LOC_Os03g49550
Os.51915.2.S1_at--569--7611Chr03:28170208..28170232 (25 bp)
GGGAAGACGTTCTTCGCCAATGCCC
LOC_Os03g49550
Os.51915.2.S1_at--502--4391Chr03:28170223..28170247 (25 bp)
GCCAATGCCCGGAAGCTGCAGGAGA
LOC_Os03g49550
Os.51915.2.S1_at--39--1051Chr03:28170274..28170298 (25 bp)
AGGTGCATCGATGAATTTGTCCAGC
LOC_Os03g49550
Os.51915.2.S1_at--866--211Chr03:28170288..28170312 (25 bp)
ATTTGTCCAGCATTTGACGTCTTGG
LOC_Os03g49550
Os.51915.2.S1_at--963--5351Chr03:28170321..28170345 (25 bp)
GAAGAACAATTCAGACGGCCAATAT
LOC_Os03g49550
Os.51915.2.S1_at--118--3891Chr03:28170336..28170360 (25 bp)
CGGCCAATATCCGTAGTAGGGTATA
LOC_Os03g49550
Os.51915.2.S1_at--22--7011Chr03:28170365..28170389 (25 bp)
GTACTCGGTGAAAGCTAGCCAACTT
LOC_Os03g49550
Os.51915.2.S1_at--229--3271Chr03:28170384..28170408 (25 bp)
CAACTTGGCTACACATGTTTTGAGG
LOC_Os03g49550
Os.51915.2.S1_at--376--6791Chr03:28170414..28170438 (25 bp)
GTTATGTGCTTGTTTGGTTCAGATC
LOC_Os03g49550
Target Sequence 
GTGGGCTCCTCAGGTGAGCATACTGGCGCACGCCGCCGTGTGCGCGTTCCTGACGCACTGCGGGTGGGGCTCCGTCGTCG
AGGGGCTCCAGTTCGGGCACCCGCTGATCATGCTGCCGATCTTAGGCGACCAAGGCCCGAACGCGCGGATTCTCGAGGGG
AGGAAGCTCGGAGTGGCGGTGCCGAGGAACGACGAGGACGGGTCGTTCGACCGAGGCGGCGTCGCCGGAGCCGTCCGCGC
CGTCGTGGTGGAGGAAGAGGGGAAGACGTTCTTCGCCAATGCCCGGAAGCTGCAGGAGATCGTGGCGGACAGGGAGCGCG
AAGAGAGGTGCATCGATGAATTTGTCCAGCATTTGACGTCTTGGAATGAGCTGAAGAACAATTCAGACGGCCAATATCCG
TAGTAGGGTATATACTGTACTCGGTGAAAGCTAGCCAACTTGGCTACACATGTTTTGAGGTTTTGGTTATGTGCTTGTTT
GGTTCAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51915.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis