Browse Element(s) Details


Os.5193.1.S1_at

Description gb:AK058714.1
DB_XREF= gi:32968732
TID=Os.5193.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D11, full insert sequence.
FL= gb:AK058714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4128010/11auxin-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41250Os.12227.1.S1_at11/118+25913926..25916839Signal recognition particle receptor beta subunit, putative, expressed
LOC_Os08g41260NANA8+25920151..25923460retrotransposon protein, putative, unclassified
LOC_Os08g41270Os.24424.1.S1_at11/118+25929623..25936998Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os08g41280Os.5193.1.S1_at10/118+25939337..25941934auxin-responsive family protein, putative, expressed
LOC_Os08g41290OsAffx.17454.1.S1_s_at11/118+25953710..25954892auxin-responsive protein, putative, expressed
LOC_Os08g41300OsAffx.27508.111.S1_s_at10/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.8861.1.S1_x_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.53621.1.S1_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41310OsAffx.29616.1.S1_at11/118+25962701..25963716hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5193.1.S1_at--1089--371Chr08:25940007..25940031 (25 bp)
ATCACAGTATTTGCGCTTGGTACCC
LOC_Os08g41280
Os.5193.1.S1_at--333--6991Chr08:25939877..25940012 (25 bp)
GTACCCTACAGATCTTTGCGCTTTT
LOC_Os08g41280
Os.5193.1.S1_at--700--251Chr08:25939828..25939852 (25 bp)
ATACCGTATCTACTGGAACGCCTAC
LOC_Os08g41280
Os.5193.1.S1_at--651--7871Chr08:25939791..25939815 (25 bp)
GGTTACACCATCATCATACTCGGCA
LOC_Os08g41280
Os.5193.1.S1_at--1072--8271Chr08:25939770..25939794 (25 bp)
GGCATCGTCAACATCTTCAAAGGGA
LOC_Os08g41280
Os.5193.1.S1_at--1122--9851Chr08:25939707..25939731 (25 bp)
TACATCATCACGATCAGCATCCTGG
LOC_Os08g41280
Os.5193.1.S1_at--1125--1531Chr08:25939692..25939716 (25 bp)
AGCATCCTGGGTGGCATTGCCGTGA
LOC_Os08g41280
Os.5193.1.S1_at--941--331Chr08:25939607..25939631 (25 bp)
ATAACGGCGCTTCAAACGGTCACTT
LOC_Os08g41280
Os.5193.1.S1_at--644--3631Chr08:25939585..25939609 (25 bp)
CTTGCCACTCTCTATGTAATTCTTG
LOC_Os08g41280
Os.5193.1.S1_at--454--6031Chr08:25939415..25939439 (25 bp)
GAGATGCCAGTACAGCTTGTTTGAT
LOC_Os08g41280
Os.5193.1.S1_at--1090--4731NONE
GCTGAGTTGAACATCCACCTTTGTA
NONE
Target Sequence 
ATCACAGTATTTGCGCTTGGTACCCTACAGATCTTTGCGCTTTTCCTGAGGCCCAAGAAGGATCACAAATACCGTATCTA
CTGGAACGCCTACCACCACTCGGTCGGTTACACCATCATCATACTCGGCATCGTCAACATCTTCAAAGGGATGTCCATCT
TGAACGTGGAGCAGAAGTGGAAGACGGGCTACATCATCACGATCAGCATCCTGGGTGGCATTGCCGTGATCCTGGAAGCT
GTTACATGGAGCATCGTCTTGAAGAGGAGGAAGGAGGAGAACAAGTCCTATAACGGCGCTTCAAACGGTCACTTGCCACT
CTCTATGTAATTCTTGTAGAGGCAGGAGGGACTTGTGATCCCTACTTATATATTCAGGAGGCTATATTCAGTTATGTTTA
TGCTTATAGGATTAGGNCCTNGTGATCTTGGTATCTCTTCTTTTGTATGATATTTGTATACTGCNCNCTATACTGGAGAT
GAGAGATGCCAGTACAGCTTGTTTGATTTTTNGTTCTGNTTTGTGAATTGCTGAGTTGAACATCCACCTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis