Browse Element(s) Details


Os.51987.1.S1_at

Description gb:AK064475.1
DB_XREF= gi:32974493
TID=Os.51987.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-H12, full insert sequence.
FL= gb:AK064475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2963011/11AC transposase, putative, expressed
LOC_Os10g142302/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29600NANA6+16974086..16978325retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29609NANA6+16980730..16981428NA
LOC_Os06g29620OsAffx.4962.1.S1_at11/116+16982851..16983159hypothetical protein
LOC_Os06g29630Os.10828.1.S1_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630Os.51987.1.S1_s_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630Os.51987.1.S1_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630OsAffx.12779.1.A1_x_at1/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29640OsAffx.15666.1.S1_at11/116+16998917..16999911hypothetical protein
LOC_Os06g29650Os.53145.1.S1_at11/116+17002690..17009233CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os06g29660OsAffx.8864.1.S1_at8/116+17010286..17011694retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51987.1.S1_at--776--9651Chr06:16991444..16991468 (25 bp)
TCAGAATCTGCATTCAGTGTCGGTG
LOC_Os06g29630
Os.51987.1.S1_at--321--5251Chr06:16991441..16991465 (25 bp)
GAATCTGCATTCAGTGTCGGTGGCC
LOC_Os06g29630
Os.51987.1.S1_at--882--471Chr06:16991439..16991463 (25 bp)
ATCTGCATTCAGTGTCGGTGGCCGT
LOC_Os06g29630
Os.51987.1.S1_at--461--9471Chr06:16991438..16991462 (25 bp)
TCTGCATTCAGTGTCGGTGGCCGTG
LOC_Os06g29630
Os.51987.1.S1_at--729--6791Chr06:16991414..16991438 (25 bp)
GTTATTGATCCATTCCGTAGCAGTC
LOC_Os06g29630
Os.51987.1.S1_at--584--10211Chr06:16991412..16991436 (25 bp)
TATTGATCCATTCCGTAGCAGTCTA
LOC_Os06g29630
Os.51987.1.S1_at--736--10731Chr06:16991410..16991434 (25 bp)
TTGATCCATTCCGTAGCAGTCTAGA
LOC_Os06g29630
Os.51987.1.S1_at--399--6371Chr06:16991408..16991432 (25 bp)
GATCCATTCCGTAGCAGTCTAGACC
LOC_Os06g29630
Os.51987.1.S1_at--99--52Chr10:7479498..7479522 (25 bp)
ATTGTGCAAGCTCTGATTTGCACCA
LOC_Os10g14230
Os.51987.1.S1_at--421--8692Chr10:7479500..7479524 (25 bp)
TGTGCAAGCTCTGATTTGCACCAAA
LOC_Os10g14230
Os.51987.1.S1_at--939--5931Chr06:16991188..16991212 (25 bp)
GAGCAGAACTTCTGTGCCATGTTGT
LOC_Os06g29630
Target Sequence 
TCAGAATCTGCATTCAGTGTCGGTGGCCGTGTTATTGATCCATTCCGTAGCAGTCTAGACCCTGAAATTGTGCAAGCTCT
GATTTGCACCAAAGATTGGACTGCAGCATCAAGAAAAGGTGGAAATGTGGTTGGGTCTATCTTACTGAGAAGGACATGGA
GAACCTGGAGCAGAACTTCTGTGCCATGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis