Browse Element(s) Details

Os.51989.1.S1_at

Description

gb:AK065243.1
DB_XREF= gi:32975261
TID=Os.51989.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002I13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002I13, full insert sequence.
FL= gb:AK064484.1 gb:AK065243.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g37220	11/11	PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os01g73150	1/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g37190	NA	NA	7	+	22279482..22282709	transposon protein, putative, unclassified
LOC_Os07g37200	NA	NA	7	+	22283352..22289507	transposon protein, putative, unclassified
LOC_Os07g37210	Os.3390.1.S1_at	7/11	7	+	22292042..22293615	Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37210	Os.57514.1.S1_x_at	1/11	7	+	22292042..22293615	Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37220	Os.51989.1.S1_at	11/11	7	+	22302166..22306982	PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37220	Os.51989.1.S2_at	11/11	7	+	22302166..22306982	PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37230	Os.27580.1.S1_at	10/11	7	+	22307726..22311869	PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37240	Os.12624.1.S1_s_at	11/11	7	+	22314578..22316241	expressed protein
LOC_Os07g37250	Os.13481.1.S1_s_at	11/11	7	+	22317345..22321480	chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250	Os.37267.1.S1_at	11/11	7	+	22317345..22321480	chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250	Os.13481.1.S1_at	10/11	7	+	22317345..22321480	chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37260	OsAffx.28794.1.S1_at	11/11	7	+	22329649..22331170	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006790	biological_process	sulfur metabolism
GO:0009409	biological_process	response to cold
GO:0009628	biological_process	response to abiotic stimulus
GO:0009738	biological_process	abscisic acid mediated signaling
GO:0009968	biological_process	negative regulation of signal transduction
GO:0016481	biological_process	negative regulation of transcription
GO:0048015	biological_process	phosphoinositide-mediated signaling
GO:0016020	cellular_component	membrane
GO:0004437	molecular_function	inositol or phosphatidylinositol phosphatase activity
GO:0008441	molecular_function	3'(2'),5'-bisphosphate nucleotidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51989.1.S1_at--1123--717	1	Chr07:22303920..22303944 (25 bp)	GTCTGTCGATATTGGCCAGTTCACT	LOC_Os07g37220
Os.51989.1.S1_at--723--549	1	Chr07:22303845..22303869 (25 bp)	GAACATGGCACGCTTTTGCATTCCT	LOC_Os07g37220
Os.51989.1.S1_at--348--1073	1	Chr07:22303830..22303854 (25 bp)	TTGCATTCCTGATAGCCAAACCTGG	LOC_Os07g37220
Os.51989.1.S1_at--104--883	1	Chr07:22303801..22303825 (25 bp)	TGATACCGCTATCTGTTCTCTTCAA	LOC_Os07g37220
Os.51989.1.S1_at--648--315	1	Chr07:22303737..22303761 (25 bp)	AATTCTCCTCTTATCTGTTTACTGT	LOC_Os07g37220
Os.51989.1.S1_at--980--697	1	Chr07:22303352..22303376 (25 bp)	GTACCTAACTGTAGCTTCTGGGAGA	LOC_Os07g37220
Os.51989.1.S1_at--561--805	1	Chr07:22303332..22303356 (25 bp)	GGAGAGCCTCCGTTTTTGTACTTCG	LOC_Os07g37220
Os.51989.1.S1_at--1150--553	1	Chr07:22303010..22303034 (25 bp)	GAAACCGTTGGATCTTGCAGCTGAC	LOC_Os07g37220
Os.51989.1.S1_at--1146--567	1	Chr07:22302970..22302994 (25 bp)	GACATTTACCCTTCAGGTGGTGTTC	LOC_Os07g37220
Os.51989.1.S1_at--852--909	1	Chr07:22302932..22302956 (25 bp)	TGCTCTGCACGGCAAGCTGGTTGAA	LOC_Os07g37220
Os.51989.1.S1_at--775--243	2	Chr07:22302812..22302836 (25 bp)	AAAATGTATTTGGTCTCTCGTTCGG	LOC_Os07g37220

Target Sequence

GTCTGTCGATATTGGCCAGTTCACTACGGCACAGAGNACTTGGAATAGATGCNTAGTGGATTCTTGTTCAGTTGTGAACA
TGGCACGCTTTTGCATTCCTGATAGCCAAACCTGGAATATGATACCGCTATCTGTTCTCTTCAACTCAACAATGGATGAA
TCCAATCCTAGAGATGAGAATGAAATTCTCCTCTTATCTGTTTACTGTGGCAGCTTGTGCAAGTACCTAACTGTAGCTTC
TGGGAGAGCCTCCGTTTTTGTACTTCGNGCACGGACGAAAAATCTCAAGTCTTGGGATCATGCTGTCGGAGTAATTTGTG
TACAGGAAGCTGGAGGTCAGATTAGTGACTGGAGTGGGAAACCGTTGGATCTTGCAGCTGACCTAACTGGGCGCAGAGAC
ATTTACCCTTCAGGTGGTGTTCTCGTCACCAACGGTGCTCTGCACGGCAAGCTGGTTGAAATGATCTCAGCAAATCACAA
GTAGCGGCAAATTTTGCATAACTGCGCACATAACACAGATTTTTCTTTTGTTAACATTTTACCTCATCAACCATCAAAAT
GTATTTGGTCTCTCGTTCGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis