Browse Element(s) Details


Os.51989.1.S2_at

Description gb:AK064484.1
DB_XREF= gi:32974502
TID=Os.51989.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002I13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-B05, full insert sequence.
FL= gb:AK064484.1 gb:AK065243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3722011/11PAP-specific phosphatase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37190NANA7+22279482..22282709transposon protein, putative, unclassified
LOC_Os07g37200NANA7+22283352..22289507transposon protein, putative, unclassified
LOC_Os07g37210Os.3390.1.S1_at7/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37210Os.57514.1.S1_x_at1/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37220Os.51989.1.S1_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37220Os.51989.1.S2_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37230Os.27580.1.S1_at10/117+22307726..22311869PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37240Os.12624.1.S1_s_at11/117+22314578..22316241expressed protein
LOC_Os07g37250Os.13481.1.S1_s_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.37267.1.S1_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.13481.1.S1_at10/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37260OsAffx.28794.1.S1_at11/117+22329649..22331170hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006790biological_processsulfur metabolism
GO:0009409biological_processresponse to cold
GO:0009628biological_processresponse to abiotic stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009968biological_processnegative regulation of signal transduction
GO:0016481biological_processnegative regulation of transcription
GO:0048015biological_processphosphoinositide-mediated signaling
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0008441molecular_function3'(2'),5'-bisphosphate nucleotidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51989.1.S2_at--1003--3051Chr07:22302606..22302630 (25 bp)
AATCTTTTGCCTTCACAATGTGTGA
LOC_Os07g37220
Os.51989.1.S2_at--15--831Chr07:22302554..22302578 (25 bp)
ATGGTTGCATAGCATCCACACACAC
LOC_Os07g37220
Os.51989.1.S2_at--927--471Chr07:22302496..22302520 (25 bp)
ATCTGACAGCAGTGCACCATGCAGT
LOC_Os07g37220
Os.51989.1.S2_at--580--3071Chr07:22302470..22302494 (25 bp)
AATCAGGATGCTTTCGGTTTGGCCA
LOC_Os07g37220
Os.51989.1.S2_at--218--7871Chr07:22302455..22302479 (25 bp)
GGTTTGGCCACCAATTCAAGCCGAA
LOC_Os07g37220
Os.51989.1.S2_at--1072--2431Chr07:22302417..22302441 (25 bp)
AAAAGGTCTGCATCTTTGCCTCTTT
LOC_Os07g37220
Os.51989.1.S2_at--942--4451Chr07:22302400..22302424 (25 bp)
GCCTCTTTGGCTCCATTTCAAGATA
LOC_Os07g37220
Os.51989.1.S2_at--315--2591Chr07:22302376..22302400 (25 bp)
AACGACCTTCATGTCCTAATGCAAG
LOC_Os07g37220
Os.51989.1.S2_at--1034--2231Chr07:22302319..22302343 (25 bp)
AAATTCCATGATCAGCACGCACTTT
LOC_Os07g37220
Os.51989.1.S2_at--711--10331Chr07:22302297..22302321 (25 bp)
TTTACTGCTTGCTTACATCCTGAAG
LOC_Os07g37220
Os.51989.1.S2_at--754--8991Chr07:22302277..22302301 (25 bp)
TGAAGATCTTGCTCTCCATTGACAC
LOC_Os07g37220
Target Sequence 
AATCTTTTGCCTTCACAATGTGTGAATCTGTTGCATAATCCTGAAAGTTTGCATGGTTGCATAGCATCCACACACACCTG
AAGCTTGTGAGGAGGAGAAAACTTGGACCAATCTGACAGCAGTGCACCATGCAGTGAATCAGGATGCTTTCGGTTTGGCC
ACCAATTCAAGCCGAAGAAAAGGACACCCAAAAGGTCTGCATCTTTGCCTCTTTGGCTCCATTTCAAGATAACGACCTTC
ATGTCCTAATGCAAGAATTGGCAGCTTCTAATCATGATTAGCCCAACAAATTCCATGATCAGCACGCACTTTACTGCTTG
CTTACATCCTGAAGATCTTGCTCTCCATTGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51989.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis