Browse Element(s) Details


Os.52069.1.S1_at

Description gb:AK064655.1
DB_XREF= gi:32974673
TID=Os.52069.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-F08, full insert sequence.
FL= gb:AK064655.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3058010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30550Os.47338.1.S1_at11/113+17389306..17393461Nuclear transport factor 2 domain containing protein, expressed
LOC_Os03g30570Os.18087.1.S1_at11/113+17404319..17407530expressed protein
LOC_Os03g30580Os.52069.1.S1_at10/113+17408100..17411833expressed protein
LOC_Os03g30590OsAffx.13132.1.S1_at11/113+17413611..17414471hypothetical protein
LOC_Os03g30600OsAffx.31801.3.S1_at11/113+17415705..17416917hypothetical protein
LOC_Os03g30610OsAffx.25300.1.S1_at11/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30610Os.35752.3.S1_x_at2/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30610Os.35752.3.S1_at1/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30620OsAffx.3372.1.S1_at11/113+17421248..17422192hypothetical protein
LOC_Os03g30630OsAffx.25301.1.S1_at11/113+17424155..17424775expressed protein
LOC_Os03g30640OsAffx.3373.1.S1_at11/113+17426287..17427090hypothetical protein
LOC_Os03g30650OsAffx.25302.1.S1_at11/113+17428163..17429788hypothetical protein
LOC_Os03g30650OsAffx.25302.2.S1_at1/113+17428163..17429788hypothetical protein
LOC_Os03g30660OsAffx.25302.2.S1_at11/113+17432403..17433119hypothetical protein
LOC_Os03g30670NANA3+17436568..17436930hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52069.1.S1_at--450--10231Chr03:17409189..17409213 (25 bp)
TTTGGATTTCATGGGCGAACTTACC
LOC_Os03g30580
Os.52069.1.S1_at--71--4591Chr03:17409175..17409199 (25 bp)
GCGAACTTACCGCATGTCTCAAGAA
LOC_Os03g30580
Os.52069.1.S1_at--244--9951Chr03:17409168..17409192 (25 bp)
TACCGCATGTCTCAAGAAGCTTTCT
LOC_Os03g30580
Os.52069.1.S1_at--836--311Chr03:17409139..17409163 (25 bp)
ATACCGACCATCACAGTGAGATTCT
LOC_Os03g30580
Os.52069.1.S1_at--266--7391Chr03:17409124..17409148 (25 bp)
GTGAGATTCTACATGATAATACACT
LOC_Os03g30580
Os.52069.1.S1_at--201--2171Chr03:17409104..17409128 (25 bp)
ACACTGTCTACATCACAACATCTGC
LOC_Os03g30580
Os.52069.1.S1_at--338--6811Chr03:17409063..17409087 (25 bp)
GTTTAATGTCGGGAGGAGCAACCTT
LOC_Os03g30580
Os.52069.1.S1_at--1024--3672Chr07:308519..308716 (25 bp)
CTTTCTGCAGCTTTTTAACCACATA
NONE
Os.52069.1.S1_at--120--4371Chr03:17408991..17409015 (25 bp)
CCACATATTGGGAGTATCGGCCTGA
LOC_Os03g30580
Os.52069.1.S1_at--817--9451Chr03:17408975..17408999 (25 bp)
TCGGCCTGACAGATTGGAATTCTAT
LOC_Os03g30580
Os.52069.1.S1_at--495--8211NONE
GGAATTCTATTGATTTGGCGATTGT
NONE
Target Sequence 
TTTGGATTTCATGGGCGAACTTACCGCATGTCTCAAGAAGCTTTCTGGGTATACCGACCATCACAGTGAGATTCTACATG
ATAATACACTGTCTACATCACAACATCTGCAATGCTGCATAATTGTGTTTAATGTCGGGAGGAGCAACCTTGAAGCTCTG
AATGTCGACCTGGAAGACTTCTTTCTGCAGCTTTTTAACCACATATTGGGAGTATCGGCCTGACAGATTGGAATTCTATT
GATTTGGCGATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis