Browse Element(s) Details


Os.18087.1.S1_at

Description gb:AK073482.1
DB_XREF= gi:32983505
TID=Os.18087.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043P22, full insert sequence.
FL= gb:AK073482.1 gb:AK119969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3057011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30530Os.7729.1.S1_at11/113+17377013..17381690expressed protein
LOC_Os03g30550Os.47338.1.S1_at11/113+17389306..17393461Nuclear transport factor 2 domain containing protein, expressed
LOC_Os03g30570Os.18087.1.S1_at11/113+17404319..17407530expressed protein
LOC_Os03g30580Os.52069.1.S1_at10/113+17408100..17411833expressed protein
LOC_Os03g30590OsAffx.13132.1.S1_at11/113+17413611..17414471hypothetical protein
LOC_Os03g30600OsAffx.31801.3.S1_at11/113+17415705..17416917hypothetical protein
LOC_Os03g30610OsAffx.25300.1.S1_at11/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30610Os.35752.3.S1_x_at2/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30610Os.35752.3.S1_at1/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30620OsAffx.3372.1.S1_at11/113+17421248..17422192hypothetical protein
LOC_Os03g30630OsAffx.25301.1.S1_at11/113+17424155..17424775expressed protein
LOC_Os03g30640OsAffx.3373.1.S1_at11/113+17426287..17427090hypothetical protein
LOC_Os03g30650OsAffx.25302.1.S1_at11/113+17428163..17429788hypothetical protein
LOC_Os03g30650OsAffx.25302.2.S1_at1/113+17428163..17429788hypothetical protein
LOC_Os03g30660OsAffx.25302.2.S1_at11/113+17432403..17433119hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18087.1.S1_at--753--5311Chr03:17406957..17406981 (25 bp)
GAAGTGCAATCTGCCAATCCACGGA
LOC_Os03g30570
Os.18087.1.S1_at--91--591Chr03:17406973..17406997 (25 bp)
ATCCACGGAGGCGAGAAGCCCATCA
LOC_Os03g30570
Os.18087.1.S1_at--240--9831Chr03:17407059..17407083 (25 bp)
TAAACGGCACCGTGACACAGCAGTC
LOC_Os03g30570
Os.18087.1.S1_at--891--6671Chr03:17407087..17407111 (25 bp)
GTTGCGAACGCTTGGGTCACTGACA
LOC_Os03g30570
Os.18087.1.S1_at--1101--591Chr03:17407112..17407136 (25 bp)
ATGCGGACGAGCAGCACTGGCGACA
LOC_Os03g30570
Os.18087.1.S1_at--222--2111Chr03:17407155..17407179 (25 bp)
ACATGCCAATGGTGTCTTCCAAGGT
LOC_Os03g30570
Os.18087.1.S1_at--500--791Chr03:17407250..17407274 (25 bp)
ATGTGTGTCTGCCATGGTAAATTCC
LOC_Os03g30570
Os.18087.1.S1_at--839--7831Chr03:17407265..17407289 (25 bp)
GGTAAATTCCATAGTCCTGCAGAGT
LOC_Os03g30570
Os.18087.1.S1_at--811--1371Chr03:17407312..17407336 (25 bp)
AGACGTCTCAAATCCGCTTAGGCAT
LOC_Os03g30570
Os.18087.1.S1_at--1113--3791Chr03:17407351..17407375 (25 bp)
CTCGCCATCGGTGTTCTTGTAATCA
LOC_Os03g30570
Os.18087.1.S1_at--728--8831Chr03:17407443..17407467 (25 bp)
TGATAAACACCCTGTTTCCGTGCGT
LOC_Os03g30570
Target Sequence 
GAAGTGCAATCTGCCAATCCACGGAGGCGAGAAGCCCATCAACCTCTGATGATACCAACCAAAACAGTGCACTTCCTCCA
ACAGCATCAACTGGCAAGCCGCTAAACGGCACCGTGACACAGCAGTCCCCGTTGCGAACGCTTGGGTCACTGACAATGCG
GACGAGCAGCACTGGCGACATCGGGAAGATCATGATGGACATGCCAATGGTGTCTTCCAAGGTGGAAGGGCCCAATGGTA
GGAAGATAGATGGCTTCCTGTACAAGTACAGGAAAGGTGAGGATGTGAGTATAATGTGTGTCTGCCATGGTAAATTCCAT
AGTCCTGCAGAGTTTGTGAAGCACGCTGGAGGGGGAGACGTCTCAAATCCGCTTAGGCATATCGTCGTCAATCCCTCGCC
ATCGGTGTTCTTGTAATCACAACCTAGGGAGGTTTTTCTTCACATTCTTTACCTGTTGAAAACCTGTAACTTGTGTTTGT
AACTTCTGATAAACACCCTGTTTCCGTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis