Browse Element(s) Details


Os.7729.1.S1_at

Description gb:AK101797.1
DB_XREF= gi:32987006
TID=Os.7729.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033066F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066F10, full insert sequence.
FL= gb:AK099879.1 gb:AK101797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3053011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30500OsAffx.25299.1.S1_at11/113+17355163..17355787hypothetical protein
LOC_Os03g30510OsAffx.13129.1.S1_at11/113+17358678..17363851hypothetical protein
LOC_Os03g30519Os.20030.1.S1_at11/113+17364930..17367884expressed protein
LOC_Os03g30530Os.7729.1.S1_at11/113+17377013..17381690expressed protein
LOC_Os03g30550Os.47338.1.S1_at11/113+17389306..17393461Nuclear transport factor 2 domain containing protein, expressed
LOC_Os03g30570Os.18087.1.S1_at11/113+17404319..17407530expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7729.1.S1_at--786--2351Chr03:17381110..17381134 (25 bp)
AAAGCTGCACCGTAGGCTCATATTT
LOC_Os03g30530
Os.7729.1.S1_at--490--5471Chr03:17381147..17381171 (25 bp)
GAACTCCTCGCCCAGCAAATGGATG
LOC_Os03g30530
Os.7729.1.S1_at--513--2971Chr03:17381164..17381188 (25 bp)
AATGGATGCCAACCACACTGTGAAT
LOC_Os03g30530
Os.7729.1.S1_at--726--6591Chr03:17381257..17381281 (25 bp)
GATTGACATGATCCAGTCTCGGTCC
LOC_Os03g30530
Os.7729.1.S1_at--533--9231Chr03:17381268..17381292 (25 bp)
TCCAGTCTCGGTCCTCAATGATAAG
LOC_Os03g30530
Os.7729.1.S1_at--283--5351Chr03:17381353..17381377 (25 bp)
GAAGAGCTCCGACAGTGAACGGCAA
LOC_Os03g30530
Os.7729.1.S1_at--1008--8191Chr03:17381451..17381475 (25 bp)
GGAAGGTGCACCTGACGCAATGGAA
LOC_Os03g30530
Os.7729.1.S1_at--128--6211Chr03:17381482..17381506 (25 bp)
GAGGCAGCTGTCTTTCATCAGCATA
LOC_Os03g30530
Os.7729.1.S1_at--1092--251Chr03:17381506..17381530 (25 bp)
ATAGGCCAAATTTCTGCTTCTTAGG
LOC_Os03g30530
Os.7729.1.S1_at--374--7051Chr03:17381623..17381647 (25 bp)
GTAACACTGAGATCTTGCCAACCAA
LOC_Os03g30530
Os.7729.1.S1_at--636--2811Chr03:17381663..17381687 (25 bp)
AAGATTCCCTCGAAGATGTTCCCTG
LOC_Os03g30530
Target Sequence 
AAAGCTGCACCGTAGGCTCATATTTGATCTTGCAAATGAACTCCTCGCCCAGCAAATGGATGCCAACCACACTGTGAATT
CATCAGTGCAGTTCTTTCAGTCAAAGAAGTTAAGTGGGTGGCAACTTTTCAAGGACTTATGTGCAGAGATTGACATGATC
CAGTCTCGGTCCTCAATGATAAGGTGCTCTGAAGAGGAAGATAGCAGGCTAGCAGAGGATGCAATGCAAGGCATGAAAGA
GTGGAAGAGCTCCGACAGTGAACGGCAAGGAATTGTTTTGGCCATTGAAAAATCCATCTTTAAGGATCTTATTGATGAGA
TAATTAGTGGAGTAGACAAAGGGAAGGTGCACCTGACGCAATGGAAGCTAAGGAGGCAGCTGTCTTTCATCAGCATATAG
GCCAAATTTCTGCTTCTTAGGAAGCTTAGCTAATGGTATATGTAACCGTTTTAAACTGGCTATACAATCCATGAGTTAAC
TGACATATATATATCTACATGAGCAAGCAAACAGTAACACTGAGATCTTGCCAACCAAAAAAAAAAATATCCAAAGATTC
CCTCGAAGATGTTCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis