Browse Element(s) Details


Os.20030.1.S1_at

Description gb:AK122114.1
DB_XREF= gi:37991760
TID=Os.20030.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128A11, full insert sequence.
FL= gb:AK122114.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3051911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30460Os.26723.1.S1_at11/113+17331418..17341791Vps52/Sac2 family protein, putative, expressed
LOC_Os03g30470Os.36593.2.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30470Os.51172.1.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30470Os.2692.1.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30500OsAffx.25299.1.S1_at11/113+17355163..17355787hypothetical protein
LOC_Os03g30510OsAffx.13129.1.S1_at11/113+17358678..17363851hypothetical protein
LOC_Os03g30519Os.20030.1.S1_at11/113+17364930..17367884expressed protein
LOC_Os03g30530Os.7729.1.S1_at11/113+17377013..17381690expressed protein
LOC_Os03g30550Os.47338.1.S1_at11/113+17389306..17393461Nuclear transport factor 2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20030.1.S1_at--653--2192Chr07:25924824..25925336 (25 bp)
ACACACCCTGTGTGTTGGAATTCTT
NONE
Os.20030.1.S1_at--135--3231Chr03:17365265..17365289 (25 bp)
CAAGTAATGTATTCCTCACAGTGAT
LOC_Os03g30519
Os.20030.1.S1_at--966--6511Chr03:17365243..17365267 (25 bp)
GATATTTCACCATGCTATCATTCTT
LOC_Os03g30519
Os.20030.1.S1_at--344--10171Chr03:17365228..17365252 (25 bp)
TATCATTCTTTACGAGCATCTTGTG
LOC_Os03g30519
Os.20030.1.S1_at--468--2511Chr03:17365147..17365171 (25 bp)
AACATTTCTTAGGTCAGCTGGTCAG
LOC_Os03g30519
Os.20030.1.S1_at--775--9631Chr03:17365126..17365150 (25 bp)
TCAGAGGCTGGGTCACTTTTTGGCA
LOC_Os03g30519
Os.20030.1.S1_at--635--2792Chr04:11924503..11924522 (20 bp)
AAGATGTTCTCGCAATTTTCCCCTT
NONE
Os.20030.1.S1_at--798--5471Chr03:17365056..17365080 (25 bp)
GAACTTATACCATCTATTTTCTTAA
LOC_Os03g30519
Os.20030.1.S1_at--1080--10751Chr03:17365016..17365040 (25 bp)
TTGAGACTGCATTGTGTCACTGACG
LOC_Os03g30519
Os.20030.1.S1_at--896--7091Chr03:17365001..17365025 (25 bp)
GTCACTGACGGTTGCTTGATAGCCA
LOC_Os03g30519
Os.20030.1.S1_at--637--7871Chr03:17364937..17364961 (25 bp)
GGTTTCTGGATGAGCCTCTTATCAT
LOC_Os03g30519
Target Sequence 
ACACACCCTGTGTGTTGGAATTCTTTTCAGGCTGTNTTCCATATAGCCAAGTAAAACTCGTAGGCAATGTAATNGTAGTA
ACAAGTAATGTATTCCTCACAGTGATATTTCACCATGCTATCATTCTTTACGAGCATCTTGTGAATGGTTTCAGGAACAG
AGCAAATGGATTGCAGTTAAGAAATGCTTATCGATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTT
TGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTTACTGTACNGAACTTATACCATCTATTTTCTTAAATGTC
AAATACTTAATTGAGACTGCATTGTGTCACTGACGGTTGCTTGATAGCCAAAATAAAAAGAGAAATATAATATAATAAAT
TTGTGCGGAGGTTTCTGGATGAGCCTCTTATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis