Browse Element(s) Details


OsAffx.13129.1.S1_at

Description tigr:9631.m02987
TID=OsAffx.13129.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3051011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30460Os.26723.1.S1_at11/113+17331418..17341791Vps52/Sac2 family protein, putative, expressed
LOC_Os03g30470Os.36593.2.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30470Os.51172.1.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30470Os.2692.1.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30500OsAffx.25299.1.S1_at11/113+17355163..17355787hypothetical protein
LOC_Os03g30510OsAffx.13129.1.S1_at11/113+17358678..17363851hypothetical protein
LOC_Os03g30519Os.20030.1.S1_at11/113+17364930..17367884expressed protein
LOC_Os03g30530Os.7729.1.S1_at11/113+17377013..17381690expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13129.1.S1_at--996--3691Chr03:17362857..17362977 (25 bp)
CTATCCTGAGTTTGCCGAGGCAGTT
LOC_Os03g30510
OsAffx.13129.1.S1_at--907--9851Chr03:17362984..17363008 (25 bp)
TACATCTCATGCAAGTCCCTCAGGA
LOC_Os03g30510
OsAffx.13129.1.S1_at--1001--971Chr03:17363005..17363029 (25 bp)
AGGAGACACGACTTGGTCCCGAATT
LOC_Os03g30510
OsAffx.13129.1.S1_at--991--3271Chr03:17363049..17363073 (25 bp)
CAAAAGTTCGCGTCTTCTGGTGGAG
LOC_Os03g30510
OsAffx.13129.1.S1_at--714--9871Chr03:17363270..17363294 (25 bp)
TACTTGGGCGTGTGATCTGGTCGAC
LOC_Os03g30510
OsAffx.13129.1.S1_at--1132--2951Chr03:17363403..17363427 (25 bp)
AATGGGCTATTGATACCGCCTTCGA
LOC_Os03g30510
OsAffx.13129.1.S1_at--1100--451Chr03:17363427..17363451 (25 bp)
ATCTCTGGCAACTGATTCATCCGGA
LOC_Os03g30510
OsAffx.13129.1.S1_at--423--6091Chr03:17363621..17363645 (25 bp)
GAGTACTGCCTAAATGCTCTTGCTG
LOC_Os03g30510
OsAffx.13129.1.S1_at--435--5731Chr03:17363703..17363727 (25 bp)
GACTGATCTTGGAGACTGACTGCCA
LOC_Os03g30510
OsAffx.13129.1.S1_at--97--5731Chr03:17363720..17363744 (25 bp)
GACTGCCAAGTCCTTACTGGTTTAT
LOC_Os03g30510
OsAffx.13129.1.S1_at--957--3051Chr03:17363773..17363797 (25 bp)
AATCTCAGCTCTGCTTACACATATG
LOC_Os03g30510
Target Sequence 
CTATCCTGAGTTTGCCGAGGCAGTTAGATGCTACATCTCATGCAAGTCCCTCAGGAGACACGACTTGGTCCCGAATTTGG
AAACTATGTGTGCCCCCAAAAGTTCGCGTCTTCTGGTGGAGGGTGACGAAAACCTTATCTGGAATCAAGGTCCTGCACCT
ACACCCGCTTACTTGGGCGTGTGATCTGGTCGACCCAAGCAGGTGGCATGGTGAGGAGCCGCGACCGGTGAGAGCTGCCA
CACAATGGGCTATTGATACCGCCTTCGATCTCTGGCAACTGATTCATCCGGAAAAGGAAAGAACAATGATTGTTCTTAGA
GATGAAAATGGAAGAACTTGTGGAGGCACTGCTCGGTGGTACGAGTACTGCCTAAATGCTCTTGCTGCTGAAGCATTGGC
GTGCTGCGATGGCATGATGCTAGCTCGGGAAAAAGGTGTTCAACGACTGATCTTGGAGACTGACTGCCAAGTCCTTACTG
GTTTATGGGAGATGAGAGCACAGCAATGTTCAGAAATCTCAGCTCTGCTTACACATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis