Browse Element(s) Details


Os.47338.1.S1_at

Description gb:AK101685.1
DB_XREF= gi:32986894
TID=Os.47338.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033058N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058N07, full insert sequence.
FL= gb:AK101685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3055011/11Nuclear transport factor 2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30519Os.20030.1.S1_at11/113+17364930..17367884expressed protein
LOC_Os03g30530Os.7729.1.S1_at11/113+17377013..17381690expressed protein
LOC_Os03g30550Os.47338.1.S1_at11/113+17389306..17393461Nuclear transport factor 2 domain containing protein, expressed
LOC_Os03g30570Os.18087.1.S1_at11/113+17404319..17407530expressed protein
LOC_Os03g30580Os.52069.1.S1_at10/113+17408100..17411833expressed protein
LOC_Os03g30590OsAffx.13132.1.S1_at11/113+17413611..17414471hypothetical protein
LOC_Os03g30600OsAffx.31801.3.S1_at11/113+17415705..17416917hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006913biological_processnucleocytoplasmic transport
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47338.1.S1_at--74--6111Chr03:17392243..17392267 (25 bp)
GAGTCCCAGCAATCTATGCAGGCAG
LOC_Os03g30550
Os.47338.1.S1_at--82--8891Chr03:17392481..17392503 (23 bp)
TGAGGCATCTCCGATTCATATGGGT
LOC_Os03g30550
Os.47338.1.S1_at--407--5431Chr03:17392532..17392970 (25 bp)
GAACCACTACCCGAGTTGTGAATGG
LOC_Os03g30550
Os.47338.1.S1_at--499--911Chr03:17393037..17393061 (25 bp)
AGGCTACCGCGGTGATAATTTCAGG
LOC_Os03g30550
Os.47338.1.S1_at--597--10371Chr03:17393149..17393173 (25 bp)
TTTTCAGGTCGTGGTCGAGGGCCAC
LOC_Os03g30550
Os.47338.1.S1_at--978--3351Chr03:17393171..17393195 (25 bp)
CACCGCCTGGGAATGGCTATCAGAA
LOC_Os03g30550
Os.47338.1.S1_at--174--5511Chr03:17393193..17393217 (25 bp)
GAACAACGGATTCCATCCAGCAAGG
LOC_Os03g30550
Os.47338.1.S1_at--700--2931Chr03:17393233..17393257 (25 bp)
AATGGGAGGTTCACCCGAGTCAACG
LOC_Os03g30550
Os.47338.1.S1_at--808--6551Chr03:17393392..17393416 (25 bp)
GATTCTTTTGCACCTTGTAACGGCT
LOC_Os03g30550
Os.47338.1.S1_at--876--7051Chr03:17393408..17393432 (25 bp)
GTAACGGCTGCTACAAGGTGAGTTT
LOC_Os03g30550
Os.47338.1.S1_at--474--10231Chr03:17393431..17393455 (25 bp)
TTTGGTGATTAATTGCCGTTGACTA
LOC_Os03g30550
Target Sequence 
GAGTCCCAGCAATCTATGCAGGCAGCAATTGAGGCATCTCCGATTCATATGGGTGGGAAAGAAGTATTTGTTGAGGAGAA
AAGAACCACTACCCGAGTTGTGAATGGTNTTGTCATCACGCGTGGTGATAATGGGAATGCTGGTGGAGNCGGACGTTACC
AATCTGGAAGGGGAGGCTACCGCGGTGATAATTTCAGGGGACGGGGTGGTGGCTATGCGAACAGCGGAAACTACCGTGGA
GGTGATAACTTCAGCAGGAGGAACGACTTGAGAAATCGCAACGAGTTTTCAGGTCGTGGTCGAGGGCCACCGCCTGGGAA
TGGCTATCAGAACAACGGATTCCATCCAGCAAGGCCGTTCCAGAACGGAAATGGGAGGTTCACCCGAGTCAACGGCCCTA
GGCAAACACCGGTTGCGGCATAGAGGAGGGCAATGATGAAGGGAAATTCACCGTAGCAGGAATTTCCTGAAGAGATTAAA
AATTTTTAGTAGAGCATTGTTTCATAGACAATTTGGGATGGGCATCAAGATTCTTTTGCACCTTGTAACGGCTGCTACAA
GGTGAGTTTTGGTGATTAATTGCCGTTGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis