Browse Element(s) Details


Os.52084.1.S1_at

Description gb:AK064684.1
DB_XREF= gi:32974702
TID=Os.52084.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B01, full insert sequence.
FL= gb:AK064684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g056907/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05650Os.49454.1.S1_at11/115+2784188..2786017C2 domain containing protein, expressed
LOC_Os05g05660OsAffx.10791.2.A1_x_at10/115+2788635..2795963PWWP domain containing protein, expressed
LOC_Os05g05670NANA5+2797545..27994721-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os05g05680NANA5+2803342..28049521-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os05g05690Os.52084.1.S1_at7/115+2808923..2811629expressed protein
LOC_Os05g05700Os.7113.1.S1_at11/115+2812160..2818866Cullin-1, putative, expressed
LOC_Os05g05710Os.22843.1.S1_at11/115+2823712..2829677EF hand family protein, expressed
LOC_Os05g05720Os.49925.2.S1_x_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05720Os.49925.2.S2_at11/115+2830871..2837288TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52084.1.S1_at--1048--311Chr05:2811183..2811207 (25 bp)
ATACTGTCATGTGGGTCCATGGCGC
LOC_Os05g05690
Os.52084.1.S1_at--524--7271Chr05:2811197..2811221 (25 bp)
GTCCATGGCGCTAGTGATTGACCCG
LOC_Os05g05690
Os.52084.1.S1_at--173--8831Chr05:2811211..2811235 (25 bp)
TGATTGACCCGCAGTACGAGGACTT
LOC_Os05g05690
Os.52084.1.S1_at--933--9931Chr05:2811225..2811249 (25 bp)
TACGAGGACTTCTTCAGCCGTGGGC
LOC_Os05g05690
Os.52084.1.S1_at--949--6131Chr05:2811258..2811282 (25 bp)
GAGGTGAACTTCTGGCCGGTGCACA
LOC_Os05g05690
Os.52084.1.S1_at--771--1171Chr05:2811445..2811469 (25 bp)
AGTACGCGCGGCTCATGCGGTTCCG
LOC_Os05g05690
Os.52084.1.S1_at--606--8711Chr05:2811589..2811613 (25 bp)
TGTCGGAGCCTTGCGTGATGCCGCC
LOC_Os05g05690
Os.52084.1.S1_at--768--6351Chr05:2811615..2811639 (25 bp)
GATGCCGGCGAGTGATAAAATGTGT
NONE
Os.52084.1.S1_at--42--5931Chr05:2811692..2811716 (25 bp)
GAGCAGTTCAACTTGGGATTTTAGG
NONE
Os.52084.1.S1_at--90--7953Chr05:2811715..2811739 (25 bp)
GGATTTGCTTTCAGCCTTAAACTTA
NONE
Os.52084.1.S1_at--343--10211Chr05:2811738..2811762 (25 bp)
TATTTTATTTTCAGCCGAGCGCAAA
NONE
Target Sequence 
ATACTGTCATGTGGGTCCATGGCGCTAGTGATTGACCCGCAGTACGAGGACTTCTTCAGCCGTGGGCTGCGGCCGGAGGT
GAACTTCTGGCCGGTGCACATCGACGTCGCCGCCGGCGGCATGTGCGAGTCGATCAGGGACGCCGTGGAGTGGGGGGAGG
CGCACCCGGCGGAGGCGGAGGCGGTGGGGCGGCGCGGCCAGCGGCTGATGGAGGAGCTCGACATGGACGCCGTCTACGAC
TACATGCTCCACCTGCTCACCGAGTACGCGCGGCTCATGCGGTTCCGGCCGGCGGAGGCGCCGCCGCCGCGGCCGCCGGC
GCAGGAGGTGTGCGAGGCGTCGGTGCTGTGCCTCGCCGGCGAGAAGCAGAGGCGGTTCCTGGAGGCATCGGCGGCGAGCC
CCGCCGTGTCGGAGCCTTGCGTGATGCCGCCCGATGCCGGCGAGTGATAAAATGTGTTACATTATGTTTTTTTTAGAGCA
ACACGGTAGGATACGTAGGCAGAAAATTTGAGCAGTTCAACTTGGGATTTTAGGATTTGCTTTCAGCCTTAAACTTATTT
TATTTTCAGCCGAGCGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis