Browse Element(s) Details


Os.52096.1.S1_at

Description gb:AK064706.1
DB_XREF= gi:32974724
TID=Os.52096.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A05, full insert sequence.
FL= gb:AK064706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1176011/11expressed protein
LOC_Os08g112009/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11720Os.18151.1.S1_at11/118+6860093..6865243expressed protein
LOC_Os08g11720Os.16492.1.S1_at10/118+6860093..6865243expressed protein
LOC_Os08g11720Os.50541.1.S1_at1/118+6860093..6865243expressed protein
LOC_Os08g11730NANA8+6874285..6874545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11740OsAffx.31869.1.S1_at8/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.5.S1_x_at6/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.4.S1_x_at2/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.4.S1_at1/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11760Os.52096.1.S1_at11/118+6884757..6887329expressed protein
LOC_Os08g11760Os.46610.1.S1_x_at7/118+6884757..6887329expressed protein
LOC_Os08g11760Os.52049.1.S1_at1/118+6884757..6887329expressed protein
LOC_Os08g11760Os.53292.1.S1_at1/118+6884757..6887329expressed protein
LOC_Os08g11760Os.53292.1.S1_x_at1/118+6884757..6887329expressed protein
LOC_Os08g11770NANA8+6890808..6891998transposon protein, putative, unclassified
LOC_Os08g11780NANA8+6893811..6900484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11790NANA8+6902740..6909383retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52096.1.S1_at--189--8052Chr08:6887111..6887135 (25 bp)
GGAGTTCAGCCACACATTGTCTAAT
LOC_Os08g11760
Os.52096.1.S1_at--452--6552Chr08:6887139..6887163 (25 bp)
GATTATAGTAGATGGCTGGGCCCCT
LOC_Os08g11760
Os.52096.1.S1_at--655--3892Chr08:6887154..6887178 (25 bp)
CTGGGCCCCTATTATCTGGATTTGG
LOC_Os08g11760
Os.52096.1.S1_at--341--10212Chr08:6887163..6887187 (25 bp)
TATTATCTGGATTTGGCCGTGCAGC
LOC_Os08g11760
Os.52096.1.S1_at--1042--8412Chr08:6887177..6887201 (25 bp)
GGCCGTGCAGCAAAGGTCCCAAATG
LOC_Os08g11760
Os.52096.1.S1_at--902--1032Chr08:6887190..6887214 (25 bp)
AGGTCCCAAATGATGAACTTGTTTT
LOC_Os08g11760
Os.52096.1.S1_at--464--6792Chr08:6887210..6887234 (25 bp)
GTTTTGCATGAACAAACCCAATGTT
LOC_Os08g11760
Os.52096.1.S1_at--472--2351Chr08:6887223..6887247 (25 bp)
AAACCCAATGTTTTATCGTGCTTAT
LOC_Os08g11760
Os.52096.1.S1_at--1068--491Chr08:6887237..6887261 (25 bp)
ATCGTGCTTATGCTACCTTAAAATG
LOC_Os08g11760
Os.52096.1.S1_at--512--3012Chr08:6887269..6887293 (25 bp)
AATGCTTTCCACATAAAATGCGCAA
LOC_Os08g11760
Os.52096.1.S1_at--111--3032Chr08:6887285..6887309 (25 bp)
AATGCGCAATGGTATTTCTCATATC
LOC_Os08g11760
Target Sequence 
GGAGTTCAGCCACACATTGTCTAATTTGGATTATAGTAGATGGCTGGGCCCCTATTATCTGGATTTGGCCGTGCAGCAAA
GGTCCCAAATGATGAACTTGTTTTGCATGAACAAACCCAATGTTTTATCGTGCTTATGCTACCTTAAAATGATCAATTAA
TGCTTTCCACATAAAATGCGCAATGGTATTTCTCATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis