Browse Element(s) Details


Os.52135.1.S1_at

Description gb:AK065096.1
DB_XREF= gi:32975114
TID=Os.52135.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001M14, full insert sequence.
FL= gb:AK065096.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3713011/11equilibrative nucleoside transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37090Os.22408.1.S1_at11/117+22220606..22221642Ribosome inactivating protein, expressed
LOC_Os07g37100Os.8375.1.S1_at11/117+22229333..22232900equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37110Os.53971.1.S1_at11/117+22235127..22238625equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37120NANA7+22240025..22241838retrotransposon protein, putative, LINE subclass
LOC_Os07g37130Os.52135.1.S1_at11/117+22242231..22244796equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37140Os.9008.1.S1_at11/117+22245963..22251138expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_s_at11/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_at10/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.7080.1.S1_x_at1/117+22252083..22255035expressed protein
LOC_Os07g37164NANA7+22262954..22263845NA
LOC_Os07g37180Os.19619.1.S1_at11/117+22266055..22271922ABC1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005337molecular_functionnucleoside transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52135.1.S1_at--514--4131Chr07:22242958..22242982 (25 bp)
CGCTCTGGACGTGTTCATGATCTAT
LOC_Os07g37130
Os.52135.1.S1_at--1110--711Chr07:22242942..22242966 (25 bp)
ATGATCTATGTCCTCACACTGTCAA
LOC_Os07g37130
Os.52135.1.S1_at--702--8291Chr07:22242909..22242933 (25 bp)
GGCTTTCTGGCTGAAGACACCGGGA
LOC_Os07g37130
Os.52135.1.S1_at--382--7631Chr07:22242888..22242912 (25 bp)
GGGACACACAGCTTGGGTTCTTGGT
LOC_Os07g37130
Os.52135.1.S1_at--776--4931Chr07:22242765..22242789 (25 bp)
GCTTGTGCTGATCGCAACGTTCAAT
LOC_Os07g37130
Os.52135.1.S1_at--1087--3251Chr07:22242751..22242775 (25 bp)
CAACGTTCAATGTGTCCGACCTGAT
LOC_Os07g37130
Os.52135.1.S1_at--673--531Chr07:22242668..22242692 (25 bp)
ATCGCAGTCGTTGCAAGGTTCTTGT
LOC_Os07g37130
Os.52135.1.S1_at--972--2971Chr07:22242563..22242587 (25 bp)
AATGGGCATCTCACCGTTTGTGTCA
LOC_Os07g37130
Os.52135.1.S1_at--976--8671Chr07:22242545..22242569 (25 bp)
TGTGTCATCACTGAGGCGCCCAGAG
LOC_Os07g37130
Os.52135.1.S1_at--742--5191Chr07:22242414..22242438 (25 bp)
GCAATATGCTTGTGTTCTTCCTCTT
LOC_Os07g37130
Os.52135.1.S1_at--690--8791Chr07:22242368..22242392 (25 bp)
TGTTCTTGACTGGATGTGGCTCATA
LOC_Os07g37130
Target Sequence 
CGCTCTGGACGTGTTCATGATCTATGTCCTCACACTGTCAATCTTCCCGGGCTTTCTGGCTGAAGACACCGGGACACACA
GCTTGGGTTCTTGGTATGCGCTTGTGCTGATCGCAACGTTCAATGTGTCCGACCTGATCGGGAGATACATGCCACTGATC
GAGCAGATCAAGCTGACATCCAGGAAATGGCTGCTAATCGCAGTCGTTGCAAGGTTCTTGTTCGTCCCTGCGTTCTACTT
CACGGTGAAGTATTGTGACGAGGGCTGGGTGATCATGCTAACGTCGTTTCTTGGGTTGAGCAATGGGCATCTCACCGTTT
GTGTCATCACTGAGGCGCCCAGAGGCTATAAGGGACCTGAACAGAATGCTTTGGGCAATATGCTTGTGTTCTTCCTCTTG
GCGGGCATATTTTGTGGGGTTGTTCTTGACTGGATGTGGCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis