Browse Element(s) Details


Os.52174.1.S1_at

Description gb:AK065436.1
DB_XREF= gi:32975454
TID=Os.52174.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013024A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013024A18, full insert sequence.
FL= gb:AK065436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3684011/11MORC family CW-type zinc finger 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36790Os.24917.1.S1_at11/111+20791475..20796096Protein kinase domain containing protein, expressed
LOC_Os01g36800Os.19099.1.S1_x_at2/111+20799656..20801712retrotransposon, putative, centromere-specific
LOC_Os01g36810OsAffx.23532.1.S1_at11/111+20804828..20805472hypothetical protein
LOC_Os01g36820Os.22857.1.A1_at9/111+20806847..20809629expressed protein
LOC_Os01g36820Os.8753.4.S1_x_at2/111+20806847..20809629expressed protein
LOC_Os01g36830OsAffx.23533.1.S1_x_at11/111+20813209..20815482Polygalacturonase family protein, expressed
LOC_Os01g36840Os.15476.1.S1_s_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.52174.1.S1_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_x_at10/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.3.S1_x_at9/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_at8/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36850Os.31233.1.S1_at10/111+20845528..20848349transposon protein, putative, Pong sub-class, expressed
LOC_Os01g36860Os.11734.1.S1_a_at11/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36860Os.11734.3.S1_x_at5/111+20849294..20855064RNA helicase DB10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52174.1.S1_at--563--5171Chr01:20820810..20820834 (25 bp)
GCAAGCTTACATTTGACTCTGCTAA
LOC_Os01g36840
Os.52174.1.S1_at--916--4751Chr01:20820758..20820782 (25 bp)
GCTGCAAAATTGCTTTCTTGTCATA
LOC_Os01g36840
Os.52174.1.S1_at--307--10531Chr01:20820744..20820768 (25 bp)
TTCTTGTCATACTTAACCCAGTGGG
LOC_Os01g36840
Os.52174.1.S1_at--696--2611Chr01:20820730..20820754 (25 bp)
AACCCAGTGGGATTTCGACCATCAT
LOC_Os01g36840
Os.52174.1.S1_at--534--2331Chr01:20820693..20820717 (25 bp)
AAAGTTGCATAGATGGTCGCCCTTG
LOC_Os01g36840
Os.52174.1.S1_at--279--911Chr01:20820658..20820682 (25 bp)
AGGCTGGCTAGTTACTCTTGTACTT
LOC_Os01g36840
Os.52174.1.S1_at--1097--8491Chr01:20820543..20820567 (25 bp)
TGGCAGGGTTTCAGCATATTTGTCT
LOC_Os01g36840
Os.52174.1.S1_at--39--8251Chr01:20820481..20820505 (25 bp)
GGCACAGCAATATATTTTTCACCTA
LOC_Os01g36840
Os.52174.1.S1_at--202--2991Chr01:20820425..20820449 (25 bp)
AATGTCTATTTTTAGCTCTCCAATA
LOC_Os01g36840
Os.52174.1.S1_at--1150--6311Chr01:20820370..20820394 (25 bp)
GATGCAATAGCCACTATCTGTCAAC
LOC_Os01g36840
Os.52174.1.S1_at--328--8731Chr01:20820352..20820376 (25 bp)
TGTCAACATCGTCTTCTGGTATTTC
LOC_Os01g36840
Target Sequence 
GCAAGCTTACATTTGACTCTGCTAATTCAAGATTTTGAATCCTCAACCCACAGCTGCAAAATTGCTTTCTTGTCATACTT
AACCCAGTGGGATTTCGACCATCATATGGTTGCTGAAAAAGTTGCATAGATGGTCGCCCTTGCCTTGTCCAGAGGCTGGC
TAGTTACTCTTGTACTTAATTATACCAGTAGTATTTGTTGATGCATAGTAACATTTACGTGATAAAGTGGAAATAGCCAC
AACCAAAAAGTAGAGAAAATGTATGGTTGGCAGGGTTTCAGCATATTTGTCTGACAGTAAATAGGTAACTGGACTAATCT
AGACTGGTAGGCACAGCAATATATTTTTCACCTAAGTATCACGTCAAAAATAATCAGCAGTCTATAATGTCTATTTTTAG
CTCTCCAATATTGAACAAAGACAAATACTACTTCATTTGAGATGCAATAGCCACTATCTGTCAACATCGTCTTCTGGTAT
TTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis