Browse Element(s) Details


Os.52182.1.S1_at

Description gb:AK065496.1
DB_XREF= gi:32975514
TID=Os.52182.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52182 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013024E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013024E12, full insert sequence.
FL= gb:AK065496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0888010/11Receptor family ligand binding region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08850Os.26452.1.A1_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08850OsAffx.15320.1.S1_x_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08860Os.33759.1.S1_at11/116+4442022..4445511UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative, expressed
LOC_Os06g08870OsAffx.27518.3.S1_x_at11/116+4448305..4448774hypothetical protein
LOC_Os06g08880Os.52182.1.S1_at10/116+4458008..4462883Receptor family ligand binding region containing protein, expressed
LOC_Os06g08890OsAffx.4774.1.S1_at11/116+4471701..4474022Ligand-gated ion channel family protein, expressed
LOC_Os06g08900OsAffx.27521.1.S1_at11/116+4480241..4486784Ligand-gated ion channel family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52182.1.S1_at--596--4091Chr06:4462302..4462326 (25 bp)
CGACGACAAGCTCCGGCTGAAGCCG
LOC_Os06g08880
Os.52182.1.S1_at--1005--9791Chr06:4462520..4462544 (25 bp)
TAAGCGAGCCGCATCAGTTGGTTGG
LOC_Os06g08880
Os.52182.1.S1_at--488--5431Chr06:4462554..4462578 (25 bp)
GAACCAGAACCACTCAGCTGCAGGG
LOC_Os06g08880
Os.52182.1.S1_at--451--8871Chr06:4462572..4462596 (25 bp)
TGCAGGGACCAGCTCAACAGTAGTA
LOC_Os06g08880
Os.52182.1.S1_at--1--8351Chr06:4462640..4462664 (25 bp)
GGCTGATGCAAGATATCACCTCGGA
LOC_Os06g08880
Os.52182.1.S1_at--3--251Chr06:4462652..4462676 (25 bp)
ATATCACCTCGGAGGCATCATCCTG
LOC_Os06g08880
Os.52182.1.S1_at--616--8691Chr06:4462675..4462699 (25 bp)
TGTCCCGTTCTGTAGTAGTATTTTT
LOC_Os06g08880
Os.52182.1.S1_at--190--6771NONE
GTTACACGGTCCTATCAATACTTCA
NONE
Os.52182.1.S1_at--648--2011Chr06:4462774..4462798 (25 bp)
ACTAGCAATAACAGCGCGCTACGCT
LOC_Os06g08880
Os.52182.1.S1_at--298--9951Chr06:4462793..4462817 (25 bp)
TACGCTGCGCGTGTGTTTAAGATGA
LOC_Os06g08880
Os.52182.1.S1_at--49--7831Chr06:4462827..4462851 (25 bp)
GGTAGTTTTCAGCTGGTAATTTGTA
LOC_Os06g08880
Target Sequence 
CGACGACAAGCTCCGGCTGAAGCCGAGGAGCTTCGGCGGGCTGTTCCTCATCAACGCCGCCGTGTCCTCCGCCGCGCTCC
TGGCCCACCTCGTCGCCGTCTCGTCGCTGCCGACGGAGCTGCGGCGGCGCTTCGCCGTCGTCGTCGCTTTCGGTGTATCC
GGCCGGCGTGGAGGTGGAGCGCCGGTGGCGATGGCTGGTGGCGGCGCGGAGGAGAGAATAAGCGAGCCGCATCAGTTGGT
TGGGGAACCACCGAACCAGAACCACTCAGCTGCAGGGACCAGCTCAACAGTAGTAGTACAGTAGTTGAGTACACAATAGT
CAAATAGTAGTAGTAATCGGCTGATGCAAGATATCACCTCGGAGGCATCATCCTGTCCCGTTCTGTAGTAGTATTTTTCT
TGTTTTATAGATGAGTATTGGTAATTGTTACACGGTCCTATCAATACTTCAATAGGTTGTTGTTTTATAAATACTAGCAA
TAACAGCGCGCTACGCTGCGCGTGTGTTTAAGATGATGAATAAAAGGTAGTTTTCAGCTGGTAATTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis