Browse Element(s) Details


Os.52203.1.S1_at

Description gb:AK065586.1
DB_XREF= gi:32975604
TID=Os.52203.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034O12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034O12, full insert sequence.
FL= gb:AK065586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g361006/11kinesin motor protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36070OsAffx.32050.1.S1_at11/1112+22068496..22069308hypothetical protein
LOC_Os12g36084NANA12+22088476..22089137NA
LOC_Os12g36100Os.52203.1.S1_at6/1112+22093425..22099482kinesin motor protein, putative, expressed
LOC_Os12g36110Os.15688.2.S1_x_at11/1112+22099883..22103438calmodulin-binding protein, putative, expressed
LOC_Os12g36110Os.15688.1.S1_at11/1112+22099883..22103438calmodulin-binding protein, putative, expressed
LOC_Os12g36120NANA12+22110194..22113212retrotransposon protein, putative, unclassified
LOC_Os12g36130OsAffx.32051.1.S1_x_at8/1112+22116085..22117073hypothetical protein
LOC_Os12g36140OsAffx.20387.1.S1_x_at1/1112+22118132..22120811transposon protein, putative, unclassified
LOC_Os12g36150NANA12+22121127..22123877retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52203.1.S1_at--185--5591Chr12:22099153..22099177 (25 bp)
GAAATGTTGTTGTCCACCAGTGGCC
LOC_Os12g36100
Os.52203.1.S1_at--277--8591Chr12:22099188..22099212 (25 bp)
TGGTATTGCCAGCAGAGGTGCCTTT
LOC_Os12g36100
Os.52203.1.S1_at--709--2251Chr12:22099353..22099377 (25 bp)
AAATCTTGCAATGAAGTCGCCAATG
LOC_Os12g36100
Os.52203.1.S1_at--80--2291Chr12:22099385..22099409 (25 bp)
AAAGGCTGCAAACCCCAATCAGGAA
LOC_Os12g36100
Os.52203.1.S1_at--88--8171Chr12:22099406..22099430 (25 bp)
GGAACAGCAAGCAGCTACCTTTCAG
LOC_Os12g36100
Os.52203.1.S1_at--1051--2591Chr12:22099420..22099444 (25 bp)
CTACCTTTCAGCACTACGGGTGGAA
LOC_Os12g36100
Os.52203.1.S1_at--531--7731Chr12:22099497..22099521 (25 bp)
GGTGGATCCCACTATGCCAAGGTGA
NONE
Os.52203.1.S1_at--586--9991Chr12:22099702..22099726 (25 bp)
TAGCTCACACGCAGAAGTTACGGTT
NONE
Os.52203.1.S1_at--1112--10451Chr12:22099741..22099765 (25 bp)
TTAGCCTGGAATAGATGCCCGCCAT
NONE
Os.52203.1.S1_at--18--4211Chr12:22099758..22099782 (25 bp)
CCCGCCATGTGCCATTACAACAAAG
NONE
Os.52203.1.S1_at--470--5611Chr12:22099794..22099818 (25 bp)
GACAAGTTTGTACGCTTCATCATGT
NONE
Target Sequence 
GAAATGTTGTTGTCCACCAGTGGCCTCAAAGCTGATGGTATTGCCAGCAGAGGTGCCTTTATTATAAAGAAACCTCAAAC
AAAGAATACGAAAATTACAGCAACGAAGATTCCAAATCTTGCAATGAAGTCGCCAATGTCAGAGAAAAGGCTGCAAACCC
CAATCAGGAACAGCAAGCAGCTACCTTTCAGCACTACGGGTGGAAGAAGAACTCGAAATGGCAAAATTAACACTCCAAAA
TAATCGACTAGTGCGAAGGTGGATCCCACTATGCCAAGGTGAGATCAATAGGAAACTGAAAGAAGGATGTTTCTAAAACC
CTGTATAAGGATCAGTGGATTGTTCAGTCTGATGGAAAAATTGGTTTTGAGACATCAAAGATAGAGATAAACAGATAAGA
CCTCCAACAGGACAGAGAAATTGTAAACCCAGAAGGAATTTTTCAAATTTGAGATCAGTACATAGCTCACACGCAGAAGT
TACGGTTGTATTGTATGTACATTAGCCTGGAATAGATGCCCGCCATGTGCCATTACAACAAAGAGAAGTTCAATGACAAG
TTTGTACGCTTCATCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis