Browse Element(s) Details


Os.52221.1.S1_at

Description gb:AK065713.1
DB_XREF= gi:32975731
TID=Os.52221.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042L04, full insert sequence.
FL= gb:AK065713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3894011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38880OsAffx.13241.1.S1_at10/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38880Os.54774.1.S1_x_at1/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38890NANA3+21563996..21564628retrotransposon, putative, centromere-specific
LOC_Os03g38900NANA3+21567081..21567700hypothetical protein
LOC_Os03g38920OsAffx.3439.1.S1_at8/113+21573782..21576021hypothetical protein
LOC_Os03g38930Os.16359.1.S1_at11/113+21577574..21583302expressed protein
LOC_Os03g38940Os.52221.1.S1_at11/113+21585701..21588673expressed protein
LOC_Os03g38950Os.9767.1.S1_at11/113+21589502..21591865expressed protein
LOC_Os03g38960Os.14000.1.S1_at11/113+21591963..21595861DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed
LOC_Os03g38970Os.15050.1.S1_at11/113+21602030..21614580expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52221.1.S1_at--426--6631Chr03:21586188..21586212 (25 bp)
GTTGTGTCTTTGCTGATTAGCTGCA
LOC_Os03g38940
Os.52221.1.S1_at--61--5211Chr03:21586166..21586190 (25 bp)
GCAATTGTGTGAACCTGGTGGCTAA
LOC_Os03g38940
Os.52221.1.S1_at--502--6031Chr03:21586120..21586144 (25 bp)
GAGATAACATTGCTTACTCCCTTCT
LOC_Os03g38940
Os.52221.1.S1_at--134--8871Chr03:21586066..21586090 (25 bp)
TGATGTAGTGGAAACCTCTCCTTCC
LOC_Os03g38940
Os.52221.1.S1_at--738--6051Chr03:21585970..21585994 (25 bp)
GAGTTGGATGATGTTTTTCCTACCA
LOC_Os03g38940
Os.52221.1.S1_at--8--7091Chr03:21585911..21585935 (25 bp)
GTCAATTTCTGCTATGGGAGTTCTT
LOC_Os03g38940
Os.52221.1.S1_at--406--9911Chr03:21585864..21585888 (25 bp)
TATCCTTTAAGTGACCCTAGCTGGT
LOC_Os03g38940
Os.52221.1.S1_at--652--791Chr03:21585835..21585859 (25 bp)
ATGTGTGACCATGTGAGACTTCCCT
LOC_Os03g38940
Os.52221.1.S1_at--278--8911Chr03:21585822..21585846 (25 bp)
TGAGACTTCCCTTTTGCTCTGAGCT
LOC_Os03g38940
Os.52221.1.S1_at--267--9831Chr03:21585793..21585817 (25 bp)
TAAACCTTGTAATCCCAGCGAACCT
LOC_Os03g38940
Os.52221.1.S1_at--410--4591Chr03:21585776..21585800 (25 bp)
GCGAACCTGTCGTTGTGGCTTTCAA
LOC_Os03g38940
Target Sequence 
GTTGTGTCTTTGCTGATTAGCTGCAATTGTGTGAACCTGGTGGCTAACGAGGAATGATATGGTGTTTAGAGATAACATTG
CTTACTCCCTTCTAATTTAACTTTTTCAAATTATTTCTCAACTGATGTAGTGGAAACCTCTCCTTCCCCAAGGAGAAGCA
GATGGAGGCTCTGGTGGCACGTCTGAAGGGGCAATAGCAAGGCTGCGACCAAGATCAAGAGTTGGATGATGTTTTTCCTA
CCAAAAAAAGTTTGAAGTCCGTGTTAAAGTAAGAGTTGTCAATTTCTGCTATGGGAGTTCTTACCCCTTTTTGTTTAGTT
TGTCTATCCTTTAAGTGACCCTAGCTGGTCGGGATGTGTGACCATGTGAGACTTCCCTTTTGCTCTGAGCTCATGTAAAC
CTTGTAATCCCAGCGAACCTGTCGTTGTGGCTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis