Browse Element(s) Details


Os.14000.1.S1_at

Description gb:AK070943.1
DB_XREF= gi:32980966
TID=Os.14000.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023067P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067P18, full insert sequence.
FL= gb:AK070943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3896011/11DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38900NANA3+21567081..21567700hypothetical protein
LOC_Os03g38920OsAffx.3439.1.S1_at8/113+21573782..21576021hypothetical protein
LOC_Os03g38930Os.16359.1.S1_at11/113+21577574..21583302expressed protein
LOC_Os03g38940Os.52221.1.S1_at11/113+21585701..21588673expressed protein
LOC_Os03g38950Os.9767.1.S1_at11/113+21589502..21591865expressed protein
LOC_Os03g38960Os.14000.1.S1_at11/113+21591963..21595861DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed
LOC_Os03g38970Os.15050.1.S1_at11/113+21602030..21614580expressed protein
LOC_Os03g38980Os.27850.1.S1_at11/113+21619910..21628223Lysyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006351biological_processtranscription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14000.1.S1_at--367--6371Chr03:21592573..21592597 (25 bp)
GATCCCATTCACAATTAGGCGGTAC
LOC_Os03g38960
Os.14000.1.S1_at--1059--10071Chr03:21592559..21592582 (24 bp)
TAGGCGGTACTTACCTGACGGAAGC
LOC_Os03g38960
Os.14000.1.S1_at--990--5171Chr03:21592344..21592368 (25 bp)
GCAAGTTGACTTTGCCCTTGTAGTA
LOC_Os03g38960
Os.14000.1.S1_at--110--7191Chr03:21592314..21592338 (25 bp)
GTCTGTGCAACTCCATTATGACTGG
LOC_Os03g38960
Os.14000.1.S1_at--347--8811Chr03:21592251..21592275 (25 bp)
TGTTGCCTTGACATGTATGCCTTCT
LOC_Os03g38960
Os.14000.1.S1_at--218--10151Chr03:21592236..21592260 (25 bp)
TATGCCTTCTTTCCGCAGTGTAACT
LOC_Os03g38960
Os.14000.1.S1_at--259--5851Chr03:21592175..21592199 (25 bp)
GACCATTTGCAGACTTTGTCCTGTG
LOC_Os03g38960
Os.14000.1.S1_at--384--8431Chr03:21592114..21592138 (25 bp)
GGCCTAATTTGGTAGTCGTCTAGCA
LOC_Os03g38960
Os.14000.1.S1_at--642--5871Chr03:21592084..21592108 (25 bp)
GAGCGACATTTTTGCAGTACGTAGA
LOC_Os03g38960
Os.14000.1.S1_at--533--2231Chr03:21592012..21592036 (25 bp)
AAATTCCGGTTGATTCGTGTTCTGG
LOC_Os03g38960
Os.14000.1.S1_at--464--7271Chr03:21591987..21592011 (25 bp)
GTCCATTTCCACTTTTCCAGTATAA
LOC_Os03g38960
Target Sequence 
GATCCCATTCACAATTAGGCGGTACTTACCTGACGGAAGCTATGAGGACTGGGGCGTTGACGAGCTTATTGTGGAGGACT
CCTGGAAACGCCAGGTTGGAGGCGGCTAAGCTGTGACTGAGGCTACTCAAAACGAACAGCAATGTGCTGCAAGTTGACTT
TGCCCTTGTAGTAATATGGTCTGTGCAACTCCATTATGACTGGATGCTGTATCAGTGAACTGGCGTGATGATGGCATGCC
NTGTTGCCTTGACATGTATGCCTTCTTTCCGCAGTGTAACTGTGACTGAAATTTGCATGGTTGCATCAGTTTGCTTGGAC
CATTTGCAGACTTTGTCCTGTGAATGTTCAAGGCTTAATGCTTGGTTTTTTTTTTTCTTGGCCTAATTTGGTAGTCGTCT
AGCAGACATGAGCGACATTTTTGCAGTACGTAGACATCAGACAAACGGGCGGATGCCTGGAATTGTGCTGGAACTGAACT
TAAATTCCGGTTGATTCGTGTTCTGGGTCCATTTCCACTTTTCCAGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis