Browse Element(s) Details


Os.27850.1.S1_at

Description gb:AK063765.1
DB_XREF= gi:32973783
TID=Os.27850.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B05, full insert sequence.
FL= gb:AK063765.1 gb:AK099302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3898011/11Lysyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38960Os.14000.1.S1_at11/113+21591963..21595861DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed
LOC_Os03g38970Os.15050.1.S1_at11/113+21602030..21614580expressed protein
LOC_Os03g38980Os.27850.1.S1_at11/113+21619910..21628223Lysyl-tRNA synthetase, putative, expressed
LOC_Os03g38990Os.9254.1.S1_at11/113+21628349..21635002DNA helicase family protein, expressed
LOC_Os03g39000Os.8893.1.S1_at10/113+21636579..21639637Inositol monophosphatase 3, putative, expressed
LOC_Os03g39010Os.22996.1.S1_a_at11/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39010OsAffx.22179.1.S1_at1/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39020Os.50595.1.S1_at11/113+21642000..21647792kinesin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006430biological_processlysyl-tRNA aminoacylation
GO:0005737cellular_componentcytoplasm
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0004824molecular_functionlysine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27850.1.S1_at--701--1031Chr03:21621684..21621708 (25 bp)
AGGTCTCGACCTGGATTGACTGAGA
LOC_Os03g38980
Os.27850.1.S1_at--793--6111Chr03:21621661..21621685 (25 bp)
GAGGTTTGAGCTCTTTGTTAACAAG
LOC_Os03g38980
Os.27850.1.S1_at--933--6311Chr03:21621032..21621056 (25 bp)
GATGAAACATTCTGCACAGCCCTTG
LOC_Os03g38980
Os.27850.1.S1_at--53--10771Chr03:21621010..21621034 (25 bp)
TTGAGTATGGCCTACCACCGACTGG
LOC_Os03g38980
Os.27850.1.S1_at--323--7671Chr03:21620979..21621003 (25 bp)
GGGATTGGGAATTGATCGCCTTACA
LOC_Os03g38980
Os.27850.1.S1_at--8--6391Chr03:21620966..21620990 (25 bp)
GATCGCCTTACAATGTTGCTGACTG
LOC_Os03g38980
Os.27850.1.S1_at--662--2811Chr03:21620825..21620849 (25 bp)
AAGTTCTTCTATTCCCGGCTATGAA
LOC_Os03g38980
Os.27850.1.S1_at--1124--7851Chr03:21620050..21620074 (25 bp)
GGTTTCCATGTCCTATTGTACTTTA
LOC_Os03g38980
Os.27850.1.S1_at--966--2371Chr03:21619995..21620019 (25 bp)
AAACAGTTAATCTCGCTGCAAAGAT
LOC_Os03g38980
Os.27850.1.S1_at--824--2831Chr03:21619944..21619968 (25 bp)
AAGTTTGTGCAATTTCTGTGGCCTT
LOC_Os03g38980
Os.27850.1.S1_at--164--2291Chr03:21619913..21619937 (25 bp)
AAATGATAGCGCGTTATTTGCGGTC
LOC_Os03g38980
Target Sequence 
AGGTCTCGACCTGGATTGACTGAGAGGTTTGAGCTCTTTGTTAACAAGCATGAGGTGTGCAATGCATATACAGAGTTAAA
TGATCCTGTTGTTCAGAGGCAACGGTTTGAGGAACAACTAAAGGATCGTCAATCTGGTGATGATGAAGCTATGGCATTGG
ATGAAACATTCTGCACAGCCCTTGAGTATGGCCTACCACCGACTGGTGGTTGGGGATTGGGAATTGATCGCCTTACAATG
TTGCTGACTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCCTCAAGATTAGATATGTCCACAAAG
CAGGAACCTGTCAGAAGGATTAAAGCAGACTGAATGCTGACTGAGAGGATTTCAATTGGCCCTCGAGATGGAGGATTTGA
AGGAAACTTATAATTTTGTTTTAATTGTGCATGTGAGGTTTCCATGTCCTATTGTACTTTATTTTTGGAGAACATTGGTG
GTCAGTTAAGCAAACAGTTAATCTCGCTGCAAAGATATCAAGCGTAACTTATAAGATGACTTAAGTTTGTGCAATTTCTG
TGGCCTTNCTTGAAAATGATAGCGCGTTATTTGCGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis