Browse Element(s) Details


Os.8893.1.S1_at

Description gb:AK071149.1
DB_XREF= gi:32981172
TID=Os.8893.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078H18, full insert sequence.
FL= gb:AK071149.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3900010/11Inositol monophosphatase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38970Os.15050.1.S1_at11/113+21602030..21614580expressed protein
LOC_Os03g38980Os.27850.1.S1_at11/113+21619910..21628223Lysyl-tRNA synthetase, putative, expressed
LOC_Os03g38990Os.9254.1.S1_at11/113+21628349..21635002DNA helicase family protein, expressed
LOC_Os03g39000Os.8893.1.S1_at10/113+21636579..21639637Inositol monophosphatase 3, putative, expressed
LOC_Os03g39010Os.22996.1.S1_a_at11/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39010OsAffx.22179.1.S1_at1/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39020Os.50595.1.S1_at11/113+21642000..21647792kinesin heavy chain, putative, expressed
LOC_Os03g39040OsAffx.22944.5.S1_at11/113+21655685..21657943Zinc knuckle family protein
LOC_Os03g39050OsAffx.13243.1.S1_at11/113+21662929..21664370No apical meristem protein
LOC_Os03g39050OsAffx.13243.2.S1_at3/113+21662929..21664370No apical meristem protein

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Gene Ontology Classification
GO idTypeName
GO:0006790biological_processsulfur metabolism
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0008441molecular_function3'(2'),5'-bisphosphate nucleotidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8893.1.S1_at--1005--8151Chr03:21638775..21638799 (25 bp)
GGAACCAAAAGAGATAAGGCCACTC
LOC_Os03g39000
Os.8893.1.S1_at--1126--871Chr03:21638791..21638815 (25 bp)
AGGCCACTCTGGATGATACAACAAA
LOC_Os03g39000
Os.8893.1.S1_at--86--5251NONE
GAATCAACAAGTTACTATTCAAGAT
NONE
Os.8893.1.S1_at--703--10031Chr03:21638936..21638960 (25 bp)
TAGATCTATACGGATGTGTGGCTCG
LOC_Os03g39000
Os.8893.1.S1_at--105--10191Chr03:21638942..21638966 (25 bp)
TATACGGATGTGTGGCTCGTTGGCC
LOC_Os03g39000
Os.8893.1.S1_at--599--791Chr03:21638949..21638973 (25 bp)
ATGTGTGGCTCGTTGGCCTTGAACA
LOC_Os03g39000
Os.8893.1.S1_at--544--3791Chr03:21638957..21638981 (25 bp)
CTCGTTGGCCTTGAACATGTGTGGA
LOC_Os03g39000
Os.8893.1.S1_at--19--2511Chr03:21638970..21638994 (25 bp)
AACATGTGTGGAGTTGCCTGTGGTA
LOC_Os03g39000
Os.8893.1.S1_at--728--6051Chr03:21638980..21639004 (25 bp)
GAGTTGCCTGTGGTAGGCTTGATTT
LOC_Os03g39000
Os.8893.1.S1_at--290--4211Chr03:21639029..21639141 (25 bp)
CCCCTGGGATGTGGCCGCTGGAGCT
LOC_Os03g39000
Os.8893.1.S1_at--990--6751Chr03:21639164..21639275 (25 bp)
GTTTTGTTTTTGATCCGAGTGGTGG
LOC_Os03g39000
Target Sequence 
GGAACCAAAAGAGATAAGGCCACTCTGGATGATACAACAAACAGAATCAACAAGTTACTATTCAAGATTAGATCTATACG
GATGTGTGGCTCGTTGGCCTTGAACATGTGTGGAGTTGCCTGTGGTAGGCTTGATTTGTGTTATGAGATTGGATTTGGTG
GCCCCTGGGATGTGGCCGCTGGAGCTCTGATTCTTCGGGAAGCTGGTGGTTTTGTTTTTGATCCGAGTGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis